Variant report

Variant	rs544964041
Chromosome Location	chr1:57823382-57823383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871943	chr1:57784144-57855876	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv871530	chr1:57793948-57858319	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv871968	chr1:57803349-57858319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv954	chr1:57823140-57865799	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57800000-57826600	Weak transcription	Left Ventricle	heart
2	chr1:57817600-57826600	Weak transcription	Fetal Brain Male	brain
3	chr1:57819400-57826600	Weak transcription	Fetal Stomach	stomach
4	chr1:57819400-57832000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:57821400-57826000	Weak transcription	Fetal Heart	heart
6	chr1:57821800-57823600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:57822000-57824000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:57822400-57823400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:57822400-57823600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:57822400-57823800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:57822400-57824000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr1:57822400-57824200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:57822600-57823600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr1:57822600-57823800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:57822600-57824200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:57823200-57826000	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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