Variant report

Variant	rs545712198
Chromosome Location	chr19:21481128-21481129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv911415	chr19:21388995-21487170	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv911416	chr19:21388995-21548211	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv911417	chr19:21388995-21564001	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv911419	chr19:21391844-21487170	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
11	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
12	esv3416089	chr19:21478962-21481860	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21465000-21496000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:21465400-21484600	ZNF genes & repeats	Liver	Liver
3	chr19:21467200-21489600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr19:21470600-21484200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
5	chr19:21472000-21481800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr19:21472200-21487600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:21472200-21490400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:21473600-21487200	Weak transcription	Right Ventricle	heart
9	chr19:21473800-21510400	Weak transcription	Fetal Heart	heart
10	chr19:21474000-21481600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr19:21474000-21490600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr19:21474200-21482000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr19:21474400-21492400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr19:21474800-21509800	Weak transcription	Fetal Brain Male	brain
15	chr19:21475200-21481800	Weak transcription	Pancreas	Pancrea
16	chr19:21475200-21481800	ZNF genes & repeats	Dnd41	blood
17	chr19:21475200-21483600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr19:21475200-21484000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:21475200-21484200	Weak transcription	Fetal Thymus	thymus
20	chr19:21475200-21485400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr19:21475200-21511200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr19:21475800-21481400	ZNF genes & repeats	Primary B cells from cord blood	blood
23	chr19:21476000-21481200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr19:21476000-21482000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
25	chr19:21476000-21490400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
26	chr19:21476000-21490400	Weak transcription	Hela-S3	cervix
27	chr19:21476200-21488200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr19:21476800-21487200	Weak transcription	Brain Angular Gyrus	brain
29	chr19:21476800-21497600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr19:21477000-21494400	Weak transcription	Stomach Mucosa	stomach
31	chr19:21477200-21495000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr19:21477400-21483800	Weak transcription	Brain Anterior Caudate	brain
33	chr19:21477600-21484200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr19:21477600-21484400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr19:21477600-21495800	Weak transcription	HepG2	liver
36	chr19:21478000-21482400	Weak transcription	HUVEC	blood vessel
37	chr19:21478000-21484200	Weak transcription	Brain Germinal Matrix	brain
38	chr19:21478000-21484200	Weak transcription	Colonic Mucosa	Colon
39	chr19:21478000-21497400	Weak transcription	Colon Smooth Muscle	Colon
40	chr19:21478200-21481400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr19:21478200-21482400	Weak transcription	HSMMtube	muscle
42	chr19:21478200-21483600	Weak transcription	Brain Hippocampus Middle	brain
43	chr19:21478200-21483600	Weak transcription	Fetal Brain Female	brain
44	chr19:21478200-21487000	Weak transcription	Brain Substantia Nigra	brain
45	chr19:21478200-21487200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr19:21478200-21492600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr19:21478400-21481200	Weak transcription	NH-A	brain
48	chr19:21478400-21482000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr19:21478400-21483400	Weak transcription	Ovary	ovary
50	chr19:21478400-21500600	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links