Variant report

Variant	rs546075948
Chromosome Location	chr11:93852127-93852128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv523082	chr11:93834223-93866147	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv508651	chr11:93834300-93880470	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93843400-93860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:93847400-93853600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:93847800-93852400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:93848200-93852200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:93850200-93854000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:93851000-93852400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:93851200-93856200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:93851400-93853800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:93851400-93853800	Weak transcription	NH-A	brain
10	chr11:93851400-93854200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:93851400-93854200	Weak transcription	Osteobl	bone
12	chr11:93851600-93852400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:93851800-93853200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:93851800-93854600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:93851800-93854600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr11:93852000-93853400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:93852000-93860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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