Variant report

Variant	rs546186691
Chromosome Location	chr6:149888716-149888717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149887497..149889067-chr6:149953634..149955368,2	K562	blood:
2	chr6:149865611..149871097-chr6:149883709..149888968,8	K562	blood:
3	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
4	chr6:149888124..149890319-chr6:149910443..149912439,2	MCF-7	breast:
5	chr6:149865819..149869096-chr6:149885709..149888757,8	MCF-7	breast:
6	chr6:149886717..149888905-chr6:150037583..150040474,2	MCF-7	breast:
7	chr6:149887413..149889033-chr6:149958089..149960817,2	K562	blood:
8	chr6:149887503..149889427-chr6:149890997..149894118,3	MCF-7	breast:
9	chr6:149884132..149889842-chr6:149966518..149971305,10	K562	blood:
10	chr6:149887426..149891060-chr6:150037726..150040656,4	K562	blood:
11	chr6:149884836..149889436-chr6:149966369..149971850,7	K562	blood:
12	chr6:149884840..149889202-chr6:150038504..150040931,4	K562	blood:
13	chr6:149887638..149889418-chr6:149897443..149899421,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131023	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000131013	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3350697	chr6:149888593-149889334	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149886200-149888800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr6:149886200-149888800	Active TSS	Fetal Intestine Small	intestine
3	chr6:149886200-149888800	Active TSS	Fetal Kidney	kidney
4	chr6:149886200-149888800	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:149886200-149888800	Active TSS	Rectal Smooth Muscle	rectum
6	chr6:149886200-149888800	Active TSS	A549	lung
7	chr6:149886400-149889200	Active TSS	GM12878-XiMat	blood
8	chr6:149886600-149888800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:149886600-149888800	Active TSS	Fetal Brain Female	brain
10	chr6:149886800-149888800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:149886800-149888800	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr6:149886800-149888800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:149886800-149888800	Active TSS	NHLF	lung
14	chr6:149886800-149889000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:149886800-149889000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:149887000-149888800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:149887800-149888800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:149888000-149888800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:149888000-149888800	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr6:149888000-149888800	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr6:149888000-149889000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:149888200-149888800	Flanking Active TSS	Primary B cells from peripheral blood	blood
23	chr6:149888200-149888800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr6:149888200-149888800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:149888200-149888800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:149888200-149888800	Flanking Active TSS	Brain Germinal Matrix	brain
27	chr6:149888200-149888800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr6:149888200-149889000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:149888200-149889000	Flanking Active TSS	Dnd41	blood
30	chr6:149888200-149889200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr6:149888400-149888800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr6:149888400-149888800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr6:149888400-149888800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:149888400-149888800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr6:149888400-149888800	Enhancers	Esophagus	oesophagus
36	chr6:149888400-149889000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr6:149888400-149889000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr6:149888400-149889000	Enhancers	Stomach Mucosa	stomach
39	chr6:149888400-149889000	Flanking Active TSS	Hela-S3	cervix
40	chr6:149888400-149889000	Flanking Active TSS	HepG2	liver
41	chr6:149888400-149889200	Weak transcription	Psoas Muscle	Psoas
42	chr6:149888400-149889400	Enhancers	Fetal Heart	heart
43	chr6:149888400-149889400	Enhancers	Spleen	Spleen
44	chr6:149888400-149889600	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr6:149888400-149889600	Enhancers	Small Intestine	intestine
46	chr6:149888400-149893800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:149888400-149893800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:149888400-149894200	Weak transcription	Ovary	ovary
49	chr6:149888400-149897400	Weak transcription	Lung	lung
50	chr6:149888400-149901600	Weak transcription	Aorta	Aorta

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