Variant report

Variant	rs547186
Chromosome Location	chr2:21269241-21269242
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12468735	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1713223	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs512535	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588245	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs589566	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661665	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs547186	APOB	cis	Heart Left Ventricle	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21266800-21270200	Weak transcription	Ovary	ovary
2	chr2:21267000-21270000	Weak transcription	Gastric	stomach
3	chr2:21267400-21271200	Enhancers	Fetal Intestine Small	intestine
4	chr2:21267600-21271200	Enhancers	Fetal Intestine Large	intestine
5	chr2:21268200-21270000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:21268200-21270000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:21268200-21270000	Enhancers	HepG2	liver
8	chr2:21268400-21270000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:21268400-21270200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:21268400-21270200	Weak transcription	Spleen	Spleen
11	chr2:21268600-21269600	Enhancers	Liver	Liver
12	chr2:21269200-21269800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:21269200-21270400	Enhancers	Lung	lung
14	chr2:21269200-21270800	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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