Variant report

Variant	rs1713223
Chromosome Location	chr2:21271270-21271271
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1367117	0.86[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs17395512	1.00[JPT][hapmap]
rs512535	0.86[ASW][hapmap];0.89[CEU][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs547186	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs588245	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.94[LWK][hapmap];0.91[MKK][hapmap];0.89[TSI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs589566	0.93[EUR][1000 genomes]
rs661665	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs934197	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1713223	APOB	cis	Heart Left Ventricle	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21270000-21271800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:21270600-21272200	Enhancers	HepG2	liver
3	chr2:21270600-21276000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:21270600-21276400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:21271000-21274800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:21271000-21276200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:21271000-21276400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:21271000-21276800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:21271200-21275800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:21271200-21279000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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