Variant report

Variant	rs934197
Chromosome Location	chr2:21267461-21267462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr2:21266629-21267470	HepG2	liver:	n/a	n/a
2	HNF4A	chr2:21265758-21267574	HepG2	liver:	n/a	chr2:21267010-21267024 chr2:21267008-21267026 chr2:21267009-21267017 chr2:21267010-21267024 chr2:21267383-21267398 chr2:21267039-21267047 chr2:21267009-21267024 chr2:21267383-21267398
3	HEY1	chr2:21247090-21267464	HepG2	liver:	n/a	chr2:21266946-21266961
4	BHLHE40	chr2:21265710-21267533	HepG2	liver:	n/a	chr2:21266821-21266837
5	FOXA2	chr2:21264778-21267549	HepG2	liver:	n/a	n/a
6	CEBPD	chr2:21265797-21267510	HepG2	liver:	n/a	n/a
7	MYBL2	chr2:21255028-21268201	HepG2	liver:	n/a	n/a
8	HNF4G	chr2:21266575-21267550	HepG2	liver:	n/a	chr2:21267010-21267024 chr2:21267008-21267026 chr2:21267009-21267017 chr2:21267010-21267024 chr2:21267383-21267398 chr2:21267039-21267047 chr2:21267383-21267398
9	MAX	chr2:21264733-21268238	HepG2	liver:	n/a	chr2:21266697-21266707
10	POLR2A	chr2:21224019-21267588	HepG2	liver:	n/a	n/a
11	MAZ	chr2:21267411-21267492	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr2:21224065-21268658	HepG2	liver:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC010872.2.1-2	chr2:21267101-21267489	XLOC_001386

Variant related genes	Relation type
APOB	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1367117	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1713223	0.89[ASN][1000 genomes]
rs588245	0.97[ASN][1000 genomes]
rs661665	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21265200-21268400	Enhancers	Spleen	Spleen
2	chr2:21265800-21267600	Bivalent Enhancer	Fetal Stomach	stomach
3	chr2:21266000-21268400	Enhancers	Lung	lung
4	chr2:21266400-21267800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
5	chr2:21266800-21267600	Weak transcription	Right Ventricle	heart
6	chr2:21266800-21270200	Weak transcription	Ovary	ovary
7	chr2:21267000-21267600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chr2:21267000-21267600	Bivalent Enhancer	Placenta	Placenta
9	chr2:21267000-21267800	Weak transcription	Left Ventricle	heart
10	chr2:21267000-21268000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:21267000-21268400	Enhancers	Adipose Nuclei	Adipose
12	chr2:21267000-21270000	Weak transcription	Gastric	stomach
13	chr2:21267200-21267600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
14	chr2:21267200-21267600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
15	chr2:21267200-21267600	Flanking Active TSS	Fetal Intestine Large	intestine
16	chr2:21267200-21268200	Flanking Active TSS	HepG2	liver
17	chr2:21267200-21268400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr2:21267200-21268400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:21267200-21268600	Flanking Active TSS	Liver	Liver
20	chr2:21267400-21267800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
21	chr2:21267400-21268000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
22	chr2:21267400-21268000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
23	chr2:21267400-21268000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
24	chr2:21267400-21268200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr2:21267400-21268200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr2:21267400-21268200	Enhancers	HUVEC	blood vessel
27	chr2:21267400-21268400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
28	chr2:21267400-21268400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr2:21267400-21271200	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links