Variant report

Variant	rs661665
Chromosome Location	chr2:21265141-21265142
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21247697..21249209-chr2:21263867..21265752,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12468735	0.81[EUR][1000 genomes]
rs1367117	0.95[ASN][1000 genomes]
rs1713223	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs512535	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs547186	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs588245	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs589566	0.88[EUR][1000 genomes]
rs934197	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs661665	APOB	cis	Heart Left Ventricle	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21256600-21266400	Transcr. at gene 5' and 3'	HepG2	liver
2	chr2:21260400-21266000	Weak transcription	Lung	lung
3	chr2:21261600-21266000	Weak transcription	Left Ventricle	heart
4	chr2:21261600-21266000	Weak transcription	Right Ventricle	heart
5	chr2:21261800-21265400	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
6	chr2:21261800-21265800	Transcr. at gene 5' and 3'	Liver	Liver
7	chr2:21262000-21265400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
8	chr2:21262000-21266000	Weak transcription	Pancreas	Pancrea
9	chr2:21262200-21265600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:21262200-21265800	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:21262200-21266000	Weak transcription	Gastric	stomach
12	chr2:21262400-21266000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:21263400-21266200	Active TSS	Right Atrium	heart
14	chr2:21263600-21267200	Active TSS	Duodenum Mucosa	Duodenum
15	chr2:21264000-21265200	Weak transcription	Spleen	Spleen
16	chr2:21264200-21266000	Weak transcription	Aorta	Aorta
17	chr2:21264600-21265400	Enhancers	Ovary	ovary
18	chr2:21264800-21265200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:21264800-21265800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:21264800-21266000	Enhancers	Adipose Nuclei	Adipose
21	chr2:21265000-21265200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:21265000-21265200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:21265000-21266000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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