Variant report

Variant	rs549292063
Chromosome Location	chr9:86501763-86501764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86499637..86502408-chr9:86534472..86537007,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165115	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv438108	chr9:86488586-86542206	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
7	esv2753071	chr9:86500946-86517546	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86460600-86518200	Weak transcription	Thymus	Thymus
2	chr9:86461600-86535400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:86461600-86535400	Weak transcription	Ovary	ovary
4	chr9:86462200-86535200	Weak transcription	Fetal Brain Female	brain
5	chr9:86462600-86503800	Weak transcription	Dnd41	blood
6	chr9:86462600-86535200	Weak transcription	Brain Anterior Caudate	brain
7	chr9:86462800-86515000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:86462800-86518000	Weak transcription	Fetal Intestine Large	intestine
9	chr9:86462800-86518000	Weak transcription	Fetal Stomach	stomach
10	chr9:86481000-86535800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:86482000-86518000	Weak transcription	Left Ventricle	heart
12	chr9:86490400-86510800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:86491000-86535200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:86491200-86502200	Weak transcription	Brain Germinal Matrix	brain
15	chr9:86491200-86535200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:86491400-86518000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:86491800-86518200	Weak transcription	Primary B cells from cord blood	blood
18	chr9:86495000-86518000	Weak transcription	Primary T cells from cord blood	blood
19	chr9:86496000-86535000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:86496400-86533000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:86496600-86515600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr9:86498800-86504000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:86499200-86513400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr9:86499400-86518200	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:86499400-86535000	Weak transcription	Fetal Kidney	kidney
26	chr9:86499800-86501800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr9:86499800-86501800	Enhancers	HMEC	breast
28	chr9:86499800-86523200	Weak transcription	Fetal Thymus	thymus
29	chr9:86500000-86501800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:86500000-86501800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:86500000-86534800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:86500200-86501800	Enhancers	NHEK	skin
33	chr9:86500200-86521200	Weak transcription	Adipose Nuclei	Adipose
34	chr9:86500200-86521200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr9:86500200-86535200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr9:86500200-86535200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr9:86500200-86535600	Weak transcription	Lung	lung
38	chr9:86500400-86501800	Enhancers	Hela-S3	cervix
39	chr9:86500600-86501800	Strong transcription	Fetal Lung	lung
40	chr9:86500600-86502000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:86500600-86503000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:86500800-86501800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:86500800-86502000	Strong transcription	Duodenum Mucosa	Duodenum
44	chr9:86501000-86501800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:86501000-86501800	Enhancers	NHDF-Ad	bronchial
46	chr9:86501000-86502800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr9:86501000-86504400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:86501200-86514600	Weak transcription	HepG2	liver
49	chr9:86501200-86521600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:86501400-86503600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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