Variant report

Variant	rs551074825
Chromosome Location	chr6:149866550-149866551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149858502..149860494-chr6:149865372..149866981,2	MCF-7	breast:
2	chr6:149638315..149640262-chr6:149865472..149868393,2	K562	blood:
3	chr6:149865631..149868201-chr6:150184694..150186592,2	MCF-7	breast:
4	chr6:149864573..149867229-chr6:150066856..150070071,3	K562	blood:
5	chr6:149865819..149869096-chr6:149885709..149888757,8	MCF-7	breast:
6	chr6:149866078..149868116-chr6:151710633..151713290,2	MCF-7	breast:
7	chr6:149865611..149871097-chr6:149883709..149888968,8	K562	blood:
8	chr6:149865491..149867139-chr6:149970977..149973867,2	K562	blood:
9	chr6:149863889..149870301-chr6:149880315..149888361,14	K562	blood:
10	chr6:149864361..149868960-chr6:149967728..149970352,9	K562	blood:
11	chr6:149865589..149867401-chr6:150242514..150245357,2	MCF-7	breast:
12	chr6:149863419..149867530-chr6:149880344..149883161,3	K562	blood:
13	chr6:149865412..149868638-chr6:150066732..150070347,4	K562	blood:
14	chr6:149865149..149869984-chr6:149967517..149970273,6	K562	blood:
15	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
16	chr6:149864465..149868641-chr6:150037478..150040253,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000181472	Chromatin interaction
ENSG00000120253	Chromatin interaction
ENSG00000203722	Chromatin interaction
ENSG00000055208	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000120256	Chromatin interaction
ENSG00000131023	Chromatin interaction
ENSG00000235168	Chromatin interaction
ENSG00000055211	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149865400-149868200	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:149865600-149866600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
3	chr6:149865600-149866600	Flanking Active TSS	Thymus	Thymus
4	chr6:149865600-149866800	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr6:149865600-149866800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr6:149865600-149867800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:149865600-149867800	Active TSS	Ovary	ovary
8	chr6:149865600-149868200	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:149865600-149868200	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:149865600-149868200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr6:149865600-149868600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:149865800-149866600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
13	chr6:149865800-149866600	Flanking Active TSS	Fetal Thymus	thymus
14	chr6:149865800-149866800	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr6:149865800-149866800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr6:149865800-149867800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr6:149865800-149867800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:149865800-149867800	Active TSS	Stomach Mucosa	stomach
19	chr6:149865800-149868000	Active TSS	H9 Cell Line	embryonic stem cell
20	chr6:149865800-149868000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:149865800-149868000	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr6:149865800-149868000	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr6:149865800-149868200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:149865800-149868200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:149865800-149868200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:149865800-149868200	Active TSS	HMEC	breast
27	chr6:149866000-149866800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:149866000-149866800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:149866000-149867000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr6:149866000-149867600	Active TSS	Fetal Muscle Trunk	muscle
31	chr6:149866000-149867800	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr6:149866000-149867800	Active TSS	Brain Substantia Nigra	brain
33	chr6:149866000-149867800	Active TSS	Fetal Intestine Large	intestine
34	chr6:149866000-149867800	Active TSS	Left Ventricle	heart
35	chr6:149866000-149867800	Active TSS	Small Intestine	intestine
36	chr6:149866000-149867800	Active TSS	HSMMtube	muscle
37	chr6:149866000-149867800	Active TSS	NHDF-Ad	bronchial
38	chr6:149866000-149868000	Active TSS	H1 Cell Line	embryonic stem cell
39	chr6:149866000-149868000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:149866000-149868000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:149866000-149868000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:149866000-149868000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:149866000-149868000	Active TSS	Aorta	Aorta
44	chr6:149866000-149868000	Active TSS	Esophagus	oesophagus
45	chr6:149866000-149868000	Active TSS	NHLF	lung
46	chr6:149866000-149868200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:149866000-149868200	Active TSS	A549	lung
48	chr6:149866000-149868200	Active TSS	HSMM	muscle
49	chr6:149866000-149868200	Active TSS	K562	blood
50	chr6:149866000-149868400	Bivalent/Poised TSS	HepG2	liver

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