Variant report

Variant	rs551240446
Chromosome Location	chr6:149865831-149865832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149858502..149860494-chr6:149865372..149866981,2	MCF-7	breast:
2	chr6:149638315..149640262-chr6:149865472..149868393,2	K562	blood:
3	chr6:149865631..149868201-chr6:150184694..150186592,2	MCF-7	breast:
4	chr6:149864573..149867229-chr6:150066856..150070071,3	K562	blood:
5	chr6:149863614..149866317-chr6:150041414..150044208,2	K562	blood:
6	chr6:149865819..149869096-chr6:149885709..149888757,8	MCF-7	breast:
7	chr6:149865611..149871097-chr6:149883709..149888968,8	K562	blood:
8	chr6:149865491..149867139-chr6:149970977..149973867,2	K562	blood:
9	chr6:149863889..149870301-chr6:149880315..149888361,14	K562	blood:
10	chr6:149864361..149868960-chr6:149967728..149970352,9	K562	blood:
11	chr6:149865589..149867401-chr6:150242514..150245357,2	MCF-7	breast:
12	chr6:149863419..149867530-chr6:149880344..149883161,3	K562	blood:
13	chr6:149865412..149868638-chr6:150066732..150070347,4	K562	blood:
14	chr6:149865149..149869984-chr6:149967517..149970273,6	K562	blood:
15	chr6:149864025..149866491-chr6:150038497..150040918,2	K562	blood:
16	chr6:149865083..149869048-chr6:149884009..149889859,10	MCF-7	breast:
17	chr6:149864465..149868641-chr6:150037478..150040253,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131023	Chromatin interaction
ENSG00000120253	Chromatin interaction
ENSG00000203722	Chromatin interaction
ENSG00000055211	Chromatin interaction
ENSG00000235168	Chromatin interaction
ENSG00000120256	Chromatin interaction
ENSG00000055208	Chromatin interaction
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966665	chr6:149862756-149895103	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149837400-149866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:149865000-149866000	Flanking Active TSS	K562	blood
3	chr6:149865000-149866200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:149865000-149866200	Flanking Active TSS	NHEK	skin
5	chr6:149865000-149866400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:149865200-149866000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:149865200-149866000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:149865200-149866000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:149865200-149866000	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:149865200-149866000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:149865200-149866000	Enhancers	Gastric	stomach
12	chr6:149865200-149866000	Enhancers	Placenta Amnion	Placenta Amnion
13	chr6:149865200-149866000	Enhancers	Spleen	Spleen
14	chr6:149865200-149866200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:149865200-149866200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr6:149865200-149866200	Flanking Active TSS	Colon Smooth Muscle	Colon
17	chr6:149865200-149866400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr6:149865200-149866400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:149865200-149866400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:149865200-149866400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:149865200-149866400	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr6:149865200-149866400	Flanking Active TSS	Rectal Smooth Muscle	rectum
23	chr6:149865200-149866400	Flanking Active TSS	Dnd41	blood
24	chr6:149865400-149866000	Flanking Active TSS	Fetal Intestine Large	intestine
25	chr6:149865400-149866000	Flanking Active TSS	NHLF	lung
26	chr6:149865400-149866200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:149865400-149866200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:149865400-149866200	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr6:149865400-149866200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr6:149865400-149866200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr6:149865400-149866200	Flanking Active TSS	GM12878-XiMat	blood
32	chr6:149865400-149866200	Flanking Active TSS	NH-A	brain
33	chr6:149865400-149866400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:149865400-149866400	Flanking Active TSS	Brain Cingulate Gyrus	brain
35	chr6:149865400-149866400	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr6:149865400-149866400	Flanking Active TSS	Fetal Brain Male	brain
37	chr6:149865400-149866400	Flanking Active TSS	HUVEC	blood vessel
38	chr6:149865400-149866400	Flanking Active TSS	Osteobl	bone
39	chr6:149865400-149868200	Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr6:149865600-149866000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:149865600-149866000	Flanking Active TSS	Brain Substantia Nigra	brain
42	chr6:149865600-149866000	Flanking Active TSS	A549	lung
43	chr6:149865600-149866000	Flanking Active TSS	HSMMtube	muscle
44	chr6:149865600-149866200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:149865600-149866200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr6:149865600-149866200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr6:149865600-149866200	Flanking Active TSS	Fetal Intestine Small	intestine
48	chr6:149865600-149866200	Flanking Active TSS	Fetal Kidney	kidney
49	chr6:149865600-149866200	Flanking Active TSS	Fetal Lung	lung
50	chr6:149865600-149866200	Flanking Active TSS	Fetal Stomach	stomach

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