Variant report

Variant	rs551650520
Chromosome Location	chr9:86431972-86431973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86430622..86432919-chr9:86535075..86537489,2	MCF-7	breast:
2	chr9:86321555..86324208-chr9:86431445..86433817,2	MCF-7	breast:
3	chr9:86321469..86324662-chr9:86431245..86433854,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIF27-1	chr9:86431911-86432042	NONHSAT132747

Variant related genes	Relation type
ENSG00000165115	Chromatin interaction
ENSG00000135018	Chromatin interaction
ENSG00000254473	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2761538	chr9:86401015-86451943	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
6	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv982312	chr9:86424154-86490046	Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv3331113	chr9:86431782-86433830	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86353000-86432000	Weak transcription	Lung	lung
2	chr9:86377200-86432000	Weak transcription	Gastric	stomach
3	chr9:86410400-86432000	Weak transcription	Small Intestine	intestine
4	chr9:86412200-86432000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:86431000-86433000	Active TSS	A549	lung
6	chr9:86431000-86433200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:86431000-86433200	Active TSS	Aorta	Aorta
8	chr9:86431000-86433200	Active TSS	GM12878-XiMat	blood
9	chr9:86431000-86433200	Active TSS	Hela-S3	cervix
10	chr9:86431200-86432000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr9:86431200-86433000	Active TSS	NHDF-Ad	bronchial
12	chr9:86431200-86433200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:86431200-86433400	Active TSS	Thymus	Thymus
14	chr9:86431400-86432000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr9:86431400-86432000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr9:86431400-86432400	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr9:86431400-86433000	Active TSS	NHLF	lung
18	chr9:86431400-86433200	Active TSS	Fetal Muscle Leg	muscle
19	chr9:86431400-86433200	Active TSS	HepG2	liver
20	chr9:86431400-86433400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:86431400-86433400	Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr9:86431400-86433400	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr9:86431600-86432000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:86431600-86432000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr9:86431600-86432000	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr9:86431600-86432000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr9:86431600-86432000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:86431600-86432000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:86431600-86432000	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr9:86431600-86432000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr9:86431600-86432000	Active TSS	Fetal Kidney	kidney
32	chr9:86431600-86432000	Flanking Active TSS	HMEC	breast
33	chr9:86431600-86432000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr9:86431600-86432200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
35	chr9:86431600-86432200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:86431600-86432200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:86431600-86432800	Active TSS	Muscle Satellite Cultured Cells	--
38	chr9:86431600-86433000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:86431600-86433000	Active TSS	Primary T cells fromperipheralblood	blood
40	chr9:86431600-86433000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:86431600-86433000	Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr9:86431600-86433000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:86431600-86433000	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr9:86431600-86433000	Active TSS	Fetal Muscle Trunk	muscle
45	chr9:86431600-86433000	Active TSS	Fetal Thymus	thymus
46	chr9:86431600-86433000	Active TSS	NH-A	brain
47	chr9:86431600-86433000	Active TSS	NHEK	skin
48	chr9:86431600-86433000	Active TSS	Osteobl	bone
49	chr9:86431600-86433200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:86431600-86433200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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