Variant report

Variant	rs553802207
Chromosome Location	chr9:21183107-21183108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:21183080-21183230	HVMF	connective:	n/a	n/a
2	SPI1	chr9:21183077-21183323	GM12891	blood:	n/a	n/a
3	RAD21	chr9:21183059-21183442	HepG2	liver:	n/a	n/a
4	CTCF	chr9:21183100-21183250	GM12872	blood:	n/a	n/a
5	CTCF	chr9:21183000-21183150	HAc	cerebellar:	n/a	n/a
6	CTCF	chr9:21183102-21183389	HepG2	liver:	n/a	chr9:21183259-21183277
7	CTCF	chr9:21183080-21183230	GM12868	blood:	n/a	n/a
8	CTCF	chr9:21183080-21183230	MCF-7	breast:	n/a	n/a
9	CTCF	chr9:21183020-21183468	HCT-116	colon:	n/a	chr9:21183259-21183277
10	CTCF	chr9:21183080-21183230	GM12866	blood:	n/a	n/a
11	CTCF	chr9:21183100-21183250	A549	lung:	n/a	n/a
12	RAD21	chr9:21183106-21183414	H1-hESC	embryonic stem cell:	n/a	n/a
13	RAD21	chr9:21183017-21183515	HCT-116	colon:	n/a	n/a
14	CTCF	chr9:21183080-21183230	HRPEpiC	eye:	n/a	n/a
15	CTCF	chr9:21183060-21183210	RPTEC	kidney:	n/a	n/a
16	CTCF	chr9:21183003-21183490	A549	lung:	n/a	chr9:21183259-21183277
17	RAD21	chr9:21183064-21183371	GM12878	blood:	n/a	n/a
18	CTCF	chr9:21183094-21183406	A549	lung:	n/a	chr9:21183259-21183277
19	FOXM1	chr9:21183036-21183618	GM12878	blood:	n/a	n/a
20	CTCF	chr9:21183100-21183250	HFF-Myc	foreskin:	n/a	n/a
21	CTCF	chr9:21183098-21183455	GM12878	blood:	n/a	chr9:21183259-21183277
22	CTCF	chr9:21183040-21183190	HCM	heart:	n/a	n/a
23	CTCF	chr9:21182901-21183479	A549	lung:	n/a	chr9:21183259-21183277
24	CTCF	chr9:21183080-21183230	RPTEC	kidney:	n/a	n/a
25	CTCF	chr9:21183007-21183597	SK-N-SH	brain:	n/a	chr9:21183259-21183277
26	CTCF	chr9:21183080-21183230	HCM	heart:	n/a	n/a
27	CTCF	chr9:21183020-21183170	A549	lung:	n/a	n/a
28	CTCF	chr9:21183060-21183210	HVMF	connective:	n/a	n/a
29	RAD21	chr9:21183048-21183388	SK-N-SH_RA	brain:	n/a	n/a
30	CTCF	chr9:21183054-21183354	H1-hESC	embryonic stem cell:	n/a	chr9:21183259-21183277
31	RAD21	chr9:21183007-21183429	H1-hESC	embryonic stem cell:	n/a	n/a
32	CTCF	chr9:21183060-21183210	GM12866	blood:	n/a	n/a
33	CTCF	chr9:21183043-21183389	A549	lung:	n/a	chr9:21183259-21183277
34	CTCF	chr9:21183080-21183230	NHDF-neo	bronchial:	n/a	n/a
35	CTCF	chr9:21183040-21183190	GM12870	blood:	n/a	n/a
36	CTCF	chr9:21183060-21183210	HMEC	breast:	n/a	n/a
37	CTCF	chr9:21183060-21183210	HEEpiC	esophagus:	n/a	n/a
38	RAD21	chr9:21183096-21183446	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr9:21183104-21183374	A549	lung:	n/a	chr9:21183259-21183277
40	CTCF	chr9:21183060-21183210	HCT-116	colon:	n/a	n/a

Variant related genes	Relation type
IFNWP15	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv466293	chr9:21029330-21199680	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv613752	chr9:21029330-21199680	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1032466	chr9:21052069-21243756	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv540084	chr9:21052069-21243756	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv892735	chr9:21157373-21242161	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv968599	chr9:21166047-21239960	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv613755	chr9:21170364-21216028	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1016978	chr9:21171267-21214877	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1022579	chr9:21178517-21228248	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv2757324	chr9:21181454-21196515	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv2759678	chr9:21181454-21196515	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1018561	chr9:21181454-21228248	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
16	esv3325686	chr9:21182087-21194435	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21182800-21184000	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr9:21183000-21183400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:21183000-21183400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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