Variant report

Variant	rs554083769
Chromosome Location	chr6:81047746-81047747
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81047651..81048631-chr6:81237581..81238534,2	MCF-7	breast:
2	chr6:81047724..81048347-chr6:82463313..82464141,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1796319	chr6:81034505-81058025	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv16646	chr6:81040322-81055387	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv463907	chr6:81047559-81075912	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv604053	chr6:81047559-81075912	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81029400-81079600	Weak transcription	HSMM	muscle
3	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
4	chr6:81042200-81056400	Weak transcription	Fetal Heart	heart
5	chr6:81044400-81048000	Weak transcription	Fetal Brain Female	brain
6	chr6:81044400-81050200	Weak transcription	Fetal Kidney	kidney
7	chr6:81045200-81047800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:81045200-81047800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:81045200-81047800	Weak transcription	Aorta	Aorta
10	chr6:81045200-81048000	Weak transcription	Fetal Stomach	stomach
11	chr6:81045200-81051000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:81045600-81047800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:81045600-81047800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:81045600-81047800	Weak transcription	Liver	Liver
15	chr6:81045600-81051200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:81045800-81052600	Weak transcription	Osteobl	bone
17	chr6:81046600-81050400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:81046800-81051400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:81047000-81048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:81047000-81051200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:81047200-81048200	Weak transcription	HUVEC	blood vessel
22	chr6:81047200-81048400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:81047600-81047800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr6:81047600-81048000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:81047600-81048000	Weak transcription	Psoas Muscle	Psoas
26	chr6:81047600-81048400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:81047600-81048600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:81047600-81048600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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