Variant report

Variant	rs555367740
Chromosome Location	chr15:56298839-56298840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904245	chr15:56229760-56324451	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv457159	chr15:56255774-56321854	Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv569543	chr15:56255774-56321854	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv457160	chr15:56273446-56320235	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
6	nsv569544	chr15:56273446-56320235	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
7	nsv457161	chr15:56274443-56324451	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
8	nsv569545	chr15:56274443-56324451	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
9	nsv569546	chr15:56274443-56337527	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
10	nsv974580	chr15:56296572-56299035	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
11	nsv827339	chr15:56298487-56300438	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	nsv827340	chr15:56298487-56302591	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56295000-56299000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:56296800-56299000	Weak transcription	K562	blood
3	chr15:56298400-56299600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:56298400-56300000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:56298600-56299800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:56298600-56299800	Active TSS	Muscle Satellite Cultured Cells	--
7	chr15:56298600-56299800	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr15:56298600-56300000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:56298800-56299000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:56298800-56299200	Flanking Active TSS	A549	lung
11	chr15:56298800-56299200	Flanking Active TSS	HMEC	breast
12	chr15:56298800-56299200	Flanking Active TSS	NHEK	skin
13	chr15:56298800-56299400	Active TSS	Aorta	Aorta
14	chr15:56298800-56299400	Active TSS	Brain Hippocampus Middle	brain
15	chr15:56298800-56299800	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr15:56298800-56299800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:56298800-56299800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:56298800-56299800	Active TSS	Duodenum Mucosa	Duodenum
19	chr15:56298800-56299800	Active TSS	Placenta	Placenta
20	chr15:56298800-56299800	Active TSS	Ovary	ovary
21	chr15:56298800-56299800	Active TSS	HSMM	muscle
22	chr15:56298800-56299800	Active TSS	HSMMtube	muscle
23	chr15:56298800-56299800	Active TSS	HUVEC	blood vessel
24	chr15:56298800-56299800	Active TSS	Osteobl	bone
25	chr15:56298800-56300000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr15:56298800-56300000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:56298800-56300000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:56298800-56300000	Active TSS	Stomach Smooth Muscle	stomach
29	chr15:56298800-56300000	Active TSS	NHDF-Ad	bronchial
30	chr15:56298800-56300000	Active TSS	NHLF	lung

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