Variant report

Variant	rs555716278
Chromosome Location	chr3:54669906-54669907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428084	chr3:54404258-54742756	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834700	chr3:54637374-54803896	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv525644	chr3:54653316-54709987	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3335458	chr3:54668624-54674022	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54663600-54683800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:54665200-54672800	Weak transcription	Right Atrium	heart
3	chr3:54667800-54672200	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
4	chr3:54667800-54672400	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
5	chr3:54668400-54671600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:54668400-54674400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:54668400-54674400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:54668600-54670800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr3:54669000-54674400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:54669400-54672200	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
11	chr3:54669400-54674200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:54669800-54670800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:54669800-54671400	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
14	chr3:54669800-54672000	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
15	chr3:54669800-54672200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
16	chr3:54669800-54673000	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
17	chr3:54669800-54673000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
18	chr3:54669800-54674200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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