Variant report

Variant	rs555859371
Chromosome Location	chr19:21544465-21544466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv911416	chr19:21388995-21548211	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv911417	chr19:21388995-21564001	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv911420	chr19:21454672-21613397	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv963023	chr19:21491992-21570395	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	esv1793996	chr19:21544242-21609607	Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv1801985	chr19:21544242-21609607	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv1844586	chr19:21544242-21609607	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21542200-21547800	Weak transcription	Spleen	Spleen
2	chr19:21542400-21549000	Weak transcription	A549	lung
3	chr19:21542400-21550200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr19:21542400-21550400	Weak transcription	Lung	lung
5	chr19:21542400-21555400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr19:21542400-21555400	Weak transcription	Psoas Muscle	Psoas
7	chr19:21542400-21555600	Weak transcription	Colonic Mucosa	Colon
8	chr19:21542400-21557800	Weak transcription	Gastric	stomach
9	chr19:21542400-21562200	Weak transcription	Colon Smooth Muscle	Colon
10	chr19:21542400-21562200	Weak transcription	Fetal Heart	heart
11	chr19:21542400-21563200	Weak transcription	Brain Substantia Nigra	brain
12	chr19:21542600-21545200	Weak transcription	Adipose Nuclei	Adipose
13	chr19:21542600-21550400	Weak transcription	Esophagus	oesophagus
14	chr19:21542600-21550400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr19:21542600-21550400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr19:21542600-21555000	Weak transcription	Brain Hippocampus Middle	brain
17	chr19:21542600-21555000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr19:21542600-21555000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr19:21542600-21555200	Weak transcription	Brain Anterior Caudate	brain
20	chr19:21542600-21555600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr19:21542600-21561400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr19:21542600-21561400	Weak transcription	Pancreas	Pancrea
23	chr19:21542800-21545200	Weak transcription	HSMMtube	muscle
24	chr19:21542800-21548000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr19:21542800-21548400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr19:21542800-21550400	Weak transcription	Aorta	Aorta
27	chr19:21542800-21555000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr19:21542800-21561400	Weak transcription	Right Ventricle	heart
29	chr19:21543000-21544600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr19:21543000-21544600	Weak transcription	NHEK	skin
31	chr19:21543000-21545000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr19:21543000-21545000	Weak transcription	NH-A	brain
33	chr19:21543000-21545400	Transcr. at gene 5' and 3'	Dnd41	blood
34	chr19:21543000-21548000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr19:21543000-21549200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr19:21543000-21549800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr19:21543000-21550400	Weak transcription	Brain Angular Gyrus	brain
38	chr19:21543000-21553200	Weak transcription	Osteobl	bone
39	chr19:21543000-21555600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr19:21543000-21556600	Weak transcription	HepG2	liver
41	chr19:21543000-21563000	Weak transcription	NHLF	lung
42	chr19:21543000-21566600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr19:21543000-21566800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr19:21543200-21544600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr19:21543200-21544600	Weak transcription	HUVEC	blood vessel
46	chr19:21543200-21545000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr19:21543200-21545400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr19:21543200-21545400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr19:21543200-21546800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:21543200-21548000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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