Variant report

Variant	rs55648009
Chromosome Location	chr1:59074215-59074216
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12057137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076312	1.00[EUR][1000 genomes]
rs12093800	0.83[AMR][1000 genomes]
rs57497727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57967967	1.00[EUR][1000 genomes]
rs58742108	1.00[EUR][1000 genomes]
rs58904200	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60809319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909624	1.00[EUR][1000 genomes]
rs72922103	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59060600-59082200	Weak transcription	HUVEC	blood vessel
2	chr1:59062600-59074600	Weak transcription	NHEK	skin
3	chr1:59062800-59074800	Weak transcription	HMEC	breast
4	chr1:59065200-59074800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:59071400-59077400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:59072800-59082800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:59073200-59075000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:59073400-59074800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:59073400-59077800	Weak transcription	Aorta	Aorta
10	chr1:59074000-59074400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:59074000-59074800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:59074000-59075200	Enhancers	Stomach Mucosa	stomach
13	chr1:59074000-59075400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:59074200-59074800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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