Variant report

Variant	rs72922103
Chromosome Location	chr1:59059073-59059074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59041326..59044486-chr1:59056548..59059729,7	MCF-7	breast:
2	chr1:59049910..59054215-chr1:59054903..59060265,8	MCF-7	breast:
3	chr1:59058111..59061332-chr1:59083852..59086894,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184292	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12057137	1.00[EUR][1000 genomes]
rs12076312	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55648009	1.00[EUR][1000 genomes]
rs57497727	1.00[EUR][1000 genomes]
rs57967967	1.00[EUR][1000 genomes]
rs58742108	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58904200	1.00[EUR][1000 genomes]
rs60809319	1.00[EUR][1000 genomes]
rs6662303	0.93[AFR][1000 genomes]
rs72909624	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59051200-59063400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr1:59054400-59059400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:59055000-59060000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:59056000-59059400	Enhancers	Pancreas	Pancrea
5	chr1:59056400-59059400	Enhancers	HMEC	breast
6	chr1:59056800-59059400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:59057000-59059600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:59057200-59059200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:59057200-59059200	Enhancers	Hela-S3	cervix
10	chr1:59057200-59059400	Enhancers	NHDF-Ad	bronchial
11	chr1:59057200-59059600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:59057400-59059200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:59057400-59059200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr1:59057400-59059200	Enhancers	HSMM	muscle
15	chr1:59057400-59059400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:59057400-59059400	Enhancers	Ovary	ovary
17	chr1:59057600-59059200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:59057600-59059200	Enhancers	Osteobl	bone
19	chr1:59057800-59059600	Enhancers	NHLF	lung
20	chr1:59058000-59059200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:59058000-59062200	Weak transcription	Esophagus	oesophagus
22	chr1:59058400-59059600	Enhancers	HSMMtube	muscle
23	chr1:59058600-59060000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr1:59058600-59062800	Weak transcription	Right Ventricle	heart
25	chr1:59058800-59059400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr1:59058800-59060000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:59058800-59060000	Weak transcription	Fetal Muscle Leg	muscle
28	chr1:59058800-59060000	Weak transcription	Spleen	Spleen
29	chr1:59058800-59062000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:59058800-59062200	Weak transcription	Adipose Nuclei	Adipose
31	chr1:59058800-59062200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:59058800-59062400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:59058800-59062400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr1:59058800-59062600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr1:59058800-59062600	Weak transcription	Right Atrium	heart
36	chr1:59058800-59062800	Weak transcription	Aorta	Aorta
37	chr1:59058800-59063200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr1:59059000-59059600	Genic enhancers	HUVEC	blood vessel
39	chr1:59059000-59059600	Genic enhancers	NHEK	skin
40	chr1:59059000-59062800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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