The 2.0 version of rSNPBase

Variant report

Variant rs55650169
Chromosome Location chr1:77618450-77618451
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77585600-77619400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
2 chr1:77586400-77620600 Weak transcription Primary T cells from cord blood blood
3 chr1:77592200-77623600 Weak transcription Monocytes-CD14+_RO01746 blood
4 chr1:77595400-77640400 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr1:77597200-77624200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr1:77601000-77623600 Weak transcription Primary hematopoietic stem cells blood
7 chr1:77602200-77619600 Weak transcription Primary hematopoietic stem cells short term culture blood
8 chr1:77604400-77623600 Weak transcription Primary B cells from cord blood blood
9 chr1:77606200-77651600 Weak transcription Aorta Aorta
10 chr1:77608200-77619000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr1:77609800-77628800 Weak transcription Colonic Mucosa Colon
12 chr1:77610000-77624800 Weak transcription Left Ventricle heart
13 chr1:77610400-77620800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:77611600-77620200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr1:77611600-77624800 Weak transcription Duodenum Mucosa Duodenum
16 chr1:77612800-77630200 Weak transcription Psoas Muscle Psoas
17 chr1:77614400-77619800 Weak transcription Brain Anterior Caudate brain
18 chr1:77614400-77623200 Weak transcription Primary T killer naive cells fromperipheralblood blood
19 chr1:77614400-77624600 Weak transcription Ovary ovary
20 chr1:77614400-77624800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr1:77614400-77630200 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr1:77614400-77631000 Weak transcription Brain Cingulate Gyrus brain
23 chr1:77614400-77634000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:77614400-77634000 Weak transcription Osteobl bone
25 chr1:77614400-77635600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr1:77614400-77635600 Weak transcription NHDF-Ad bronchial
27 chr1:77614600-77625000 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:77614600-77625600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
29 chr1:77614600-77629600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:77614600-77632000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr1:77614800-77624000 Weak transcription Primary T cells fromperipheralblood blood
32 chr1:77615000-77623200 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr1:77615000-77625200 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr1:77615200-77625600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr1:77615400-77625600 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr1:77615600-77619800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:77615600-77623400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:77616200-77663200 Weak transcription Brain Hippocampus Middle brain
39 chr1:77616600-77624000 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr1:77617000-77625400 Weak transcription Adipose Nuclei Adipose
41 chr1:77617200-77636000 Weak transcription HSMM muscle
42 chr1:77617600-77619000 ZNF genes & repeats A549 lung
43 chr1:77617600-77619400 Weak transcription Liver Liver
44 chr1:77618000-77624600 Weak transcription Fetal Thymus thymus
45 chr1:77618000-77624800 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr1:77618000-77624800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr1:77618200-77623400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:77618200-77633000 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:77618400-77624200 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr1:77618400-77624200 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015