The 2.0 version of rSNPBase

Variant report

Variant rs6688757
Chromosome Location chr1:77550946-77550947
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77506000-77558600 Weak transcription Stomach Smooth Muscle stomach
2 chr1:77534000-77551400 Weak transcription NHEK skin
3 chr1:77534000-77558200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:77534200-77559200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr1:77543600-77558600 Strong transcription Cortex derived primary cultured neurospheres brain
6 chr1:77544400-77560200 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr1:77547800-77551200 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr1:77547800-77552400 Weak transcription Psoas Muscle Psoas
9 chr1:77547800-77553200 Weak transcription Primary T cells from cord blood blood
10 chr1:77547800-77554000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:77547800-77555200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr1:77547800-77555600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:77547800-77555600 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr1:77547800-77560400 Weak transcription Fetal Muscle Leg muscle
15 chr1:77547800-77564600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr1:77547800-77570600 Weak transcription Ovary ovary
17 chr1:77548400-77570400 Weak transcription Left Ventricle heart
18 chr1:77549000-77555200 Weak transcription HUES64 Cell Line embryonic stem cell
19 chr1:77549200-77552400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:77549800-77552600 Weak transcription Gastric stomach
21 chr1:77550400-77552000 Weak transcription Fetal Stomach stomach
22 chr1:77550400-77558800 Weak transcription Pancreas Pancrea
23 chr1:77550400-77570400 Weak transcription Aorta Aorta
24 chr1:77550600-77551600 Enhancers Liver Liver
25 chr1:77550600-77552000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr1:77550600-77554200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:77550800-77555200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015