Variant report

Variant	rs55651521
Chromosome Location	chr7:48642418-48642419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10265163	0.98[EUR][1000 genomes]
rs17132372	0.93[AMR][1000 genomes]
rs17132432	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17132434	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17132444	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17132457	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17132463	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17132508	1.00[EUR][1000 genomes]
rs41523451	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4606009	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56093045	0.93[AMR][1000 genomes]
rs56745635	0.93[AMR][1000 genomes]
rs58385535	0.93[AMR][1000 genomes]
rs59965341	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60694997	0.93[AMR][1000 genomes]
rs61346153	0.93[AMR][1000 genomes]
rs61451174	0.93[AMR][1000 genomes]
rs6583443	1.00[AMR][1000 genomes]
rs6951282	0.85[EUR][1000 genomes]
rs6960177	0.93[AMR][1000 genomes]
rs6971823	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73324228	0.85[EUR][1000 genomes]
rs73324231	0.90[EUR][1000 genomes]
rs73694635	0.93[AMR][1000 genomes]
rs73694639	0.93[AMR][1000 genomes]
rs73694640	0.93[AMR][1000 genomes]
rs73694648	0.93[AMR][1000 genomes]
rs73694650	0.93[AMR][1000 genomes]
rs73694653	0.93[AMR][1000 genomes]
rs73694656	0.87[AMR][1000 genomes]
rs73694659	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73694660	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73694665	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73694667	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73694668	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73694670	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73694671	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73694678	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73694693	0.95[EUR][1000 genomes]
rs73694694	1.00[EUR][1000 genomes]
rs73694695	1.00[EUR][1000 genomes]
rs7793028	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7801591	1.00[EUR][1000 genomes]
rs7812121	1.00[EUR][1000 genomes]
rs9969343	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48635800-48672200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48640200-48645800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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