Variant report

Variant	rs6971823
Chromosome Location	chr7:48572847-48572848
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10265163	0.83[EUR][1000 genomes]
rs17132372	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17132432	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132434	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132457	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132463	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132508	0.85[EUR][1000 genomes]
rs41523451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4606009	0.85[EUR][1000 genomes]
rs55651521	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56093045	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56745635	1.00[AMR][1000 genomes]
rs58385535	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59965341	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60694997	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61346153	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61451174	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6583443	0.93[AMR][1000 genomes]
rs6951282	1.00[EUR][1000 genomes]
rs6960177	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73324228	1.00[EUR][1000 genomes]
rs73324231	0.95[EUR][1000 genomes]
rs73694635	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73694639	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73694640	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73694648	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73694650	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73694653	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73694656	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73694659	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694665	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694667	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694668	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694670	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694671	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694678	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694693	0.80[EUR][1000 genomes]
rs73694694	0.85[EUR][1000 genomes]
rs73694695	0.85[EUR][1000 genomes]
rs7793028	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801591	0.85[EUR][1000 genomes]
rs7812121	0.85[EUR][1000 genomes]
rs9969343	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48523800-48574000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48566400-48575000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:48568800-48575200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:48570800-48574200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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