Variant report

Variant	rs73694668
Chromosome Location	chr7:48586094-48586095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10265163	0.83[EUR][1000 genomes]
rs17132372	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17132432	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132434	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132444	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132457	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132463	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17132508	0.85[EUR][1000 genomes]
rs41523451	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4606009	0.85[EUR][1000 genomes]
rs55651521	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56093045	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56745635	0.93[AMR][1000 genomes]
rs58385535	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59965341	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60694997	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61346153	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61451174	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6583443	0.86[AMR][1000 genomes]
rs6951282	1.00[EUR][1000 genomes]
rs6960177	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6971823	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324228	1.00[EUR][1000 genomes]
rs73324231	0.95[EUR][1000 genomes]
rs73694635	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73694639	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73694640	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73694648	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73694650	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73694653	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73694656	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73694659	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694660	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694665	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694667	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694670	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694671	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694678	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73694693	0.80[EUR][1000 genomes]
rs73694694	0.85[EUR][1000 genomes]
rs73694695	0.85[EUR][1000 genomes]
rs7793028	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801591	0.85[EUR][1000 genomes]
rs7812121	0.85[EUR][1000 genomes]
rs9969343	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2764056	chr7:48580914-48592025	Enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv11768	chr7:48581423-48592171	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
7	nsv514416	chr7:48581830-48592050	Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
8	esv1818564	chr7:48581852-48592025	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv2421774	chr7:48581852-48592025	Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
10	nsv442042	chr7:48581852-48592025	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48585400-48586800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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