Variant report

Variant	rs55668552
Chromosome Location	chr4:174225884-174225885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174217436..174220306-chr4:174225687..174227746,2	K562	blood:
2	chr4:174213071..174215997-chr4:174225379..174228344,2	K562	blood:
3	chr4:174225337..174228056-chr4:174239161..174240941,2	K562	blood:
4	chr4:174225665..174227645-chr4:174247160..174250931,3	K562	blood:

Variant related genes	Relation type
ENSG00000248774	Chromatin interaction
ENSG00000109586	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1812790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55848625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6817741	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6840382	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872505	0.85[AMR][1000 genomes]
rs73872508	0.85[AMR][1000 genomes]
rs73872532	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872535	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872537	0.85[AMR][1000 genomes]
rs73872540	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872541	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872542	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872543	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872545	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872551	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7662281	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7666228	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7675672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7684771	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7684941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7684968	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4610	chr4:174217026-174252627	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174206200-174229000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
3	chr4:174207800-174232600	Weak transcription	Ovary	ovary
4	chr4:174208800-174230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:174209000-174228600	Weak transcription	Esophagus	oesophagus
6	chr4:174209000-174233400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:174209000-174235000	Weak transcription	Colonic Mucosa	Colon
8	chr4:174209200-174226800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:174210400-174226600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr4:174210400-174235400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:174210400-174253000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:174210400-174253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:174210600-174228600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:174210600-174235200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:174210600-174235200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:174210600-174240200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:174210600-174253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:174210800-174228400	Weak transcription	Small Intestine	intestine
19	chr4:174210800-174236200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:174210800-174252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:174212200-174228000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:174212200-174228200	Weak transcription	Fetal Intestine Small	intestine
23	chr4:174212400-174228200	Weak transcription	Fetal Stomach	stomach
24	chr4:174213600-174237200	Weak transcription	NHEK	skin
25	chr4:174213800-174235400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:174214800-174235600	Weak transcription	Adipose Nuclei	Adipose
27	chr4:174215000-174228600	Weak transcription	Spleen	Spleen
28	chr4:174215000-174239400	Weak transcription	HUVEC	blood vessel
29	chr4:174215200-174228000	Weak transcription	Fetal Muscle Leg	muscle
30	chr4:174215200-174228400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:174215200-174228600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:174215200-174228600	Weak transcription	Gastric	stomach
33	chr4:174215200-174228600	Weak transcription	Lung	lung
34	chr4:174215200-174232800	Weak transcription	Pancreas	Pancrea
35	chr4:174215200-174233400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:174215200-174235200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:174215200-174236000	Weak transcription	Aorta	Aorta
38	chr4:174215200-174239600	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr4:174215200-174249600	Weak transcription	Left Ventricle	heart
40	chr4:174215200-174254000	Weak transcription	Psoas Muscle	Psoas
41	chr4:174217200-174236000	Weak transcription	Stomach Mucosa	stomach
42	chr4:174217600-174253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:174219000-174235200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr4:174219400-174228200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr4:174219400-174228200	Weak transcription	K562	blood
46	chr4:174219400-174228400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr4:174219600-174228200	Weak transcription	Fetal Intestine Large	intestine
48	chr4:174219600-174228200	Weak transcription	GM12878-XiMat	blood
49	chr4:174219600-174228600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:174220600-174236200	Weak transcription	Brain Substantia Nigra	brain

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