Variant report

Variant	rs6817741
Chromosome Location	chr4:174207169-174207170
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174197770..174199941-chr4:174205560..174208109,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1812790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55668552	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55848625	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6840382	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872505	0.85[AMR][1000 genomes]
rs73872508	0.85[AMR][1000 genomes]
rs73872532	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872534	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872535	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872537	0.85[AMR][1000 genomes]
rs73872540	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872541	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872542	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872543	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872545	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872549	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872550	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872551	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7662281	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7666228	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7675672	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7684771	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7684941	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7684968	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174186400-174208600	Weak transcription	Esophagus	oesophagus
2	chr4:174186600-174209800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:174195200-174207600	Weak transcription	Stomach Mucosa	stomach
4	chr4:174196800-174210000	Weak transcription	Gastric	stomach
5	chr4:174201600-174211200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:174202800-174207400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:174203000-174208600	Weak transcription	Aorta	Aorta
8	chr4:174203200-174214800	Weak transcription	Pancreas	Pancrea
9	chr4:174203600-174207200	Weak transcription	GM12878-XiMat	blood
10	chr4:174204600-174209000	ZNF genes & repeats	Thymus	Thymus
11	chr4:174204800-174209000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr4:174204800-174209200	ZNF genes & repeats	K562	blood
13	chr4:174205000-174209000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr4:174205000-174209200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr4:174205200-174209000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr4:174205400-174209200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
17	chr4:174205800-174209800	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:174206200-174209000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:174206200-174209600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:174206200-174229000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr4:174206400-174208000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr4:174206400-174209000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
24	chr4:174206600-174207800	ZNF genes & repeats	Fetal Lung	lung
25	chr4:174206600-174207800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:174206600-174208200	ZNF genes & repeats	Primary T cells from cord blood	blood
27	chr4:174206600-174209200	ZNF genes & repeats	Fetal Thymus	thymus
28	chr4:174206800-174207600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
29	chr4:174206800-174207800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
30	chr4:174206800-174209000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
31	chr4:174206800-174209200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:174207000-174207800	ZNF genes & repeats	Ovary	ovary
33	chr4:174207000-174208000	Strong transcription	Fetal Intestine Large	intestine
34	chr4:174207000-174208200	ZNF genes & repeats	Small Intestine	intestine
35	chr4:174207000-174209000	ZNF genes & repeats	Primary B cells from cord blood	blood

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