Variant report

Variant	rs73872534
Chromosome Location	chr4:174209907-174209908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:174209428-174209985	A549	lung:	n/a	n/a
2	RAD21	chr4:174209460-174209929	HCT-116	colon:	n/a	n/a
3	MAFK	chr4:174209874-174210038	HepG2	liver:	n/a	n/a
4	RAD21	chr4:174209451-174209920	A549	lung:	n/a	n/a
5	CTCF	chr4:174209447-174209914	HCT-116	colon:	n/a	n/a
6	MAFK	chr4:174209871-174210074	HepG2	liver:	n/a	n/a
7	GATA3	chr4:174209781-174209923	SH-SY5Y	brain:	n/a	n/a
8	CBX3	chr4:174209393-174210880	K562	blood:	n/a	n/a
9	CTCF	chr4:174209840-174209990	GM12864	blood:	n/a	n/a
10	MAFK	chr4:174209525-174209975	H1-hESC	embryonic stem cell:	n/a	n/a
11	RAD21	chr4:174209446-174209990	H1-hESC	embryonic stem cell:	n/a	n/a
12	RAD21	chr4:174209549-174209910	MCF-7	breast:	n/a	n/a
13	MAFK	chr4:174209619-174210084	IMR90	lung:	n/a	n/a
14	SMC3	chr4:174209468-174209979	GM12878	blood:	n/a	n/a
15	POLR2A	chr4:174209626-174211018	PBDE	blood:	n/a	n/a
16	GATA1	chr4:174209500-174211386	PBDE	blood:	n/a	n/a
17	RAD21	chr4:174209399-174210019	SK-N-SH	brain:	n/a	n/a
18	CTCF	chr4:174209451-174209972	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174209246..174210060-chr4:174222776..174223385,2	MCF-7	breast:
2	chr4:174207434..174212303-chr4:174214307..174216629,4	K562	blood:
3	chr4:174208171..174211607-chr4:174253885..174256277,4	K562	blood:
4	chr4:173958508..173961349-chr4:174209739..174212375,2	MCF-7	breast:
5	chr4:174209692..174212303-chr4:174214307..174216629,2	K562	blood:
6	chr4:174209019..174210299-chr4:174337781..174338884,5	K562	blood:

No data

Variant related genes	Relation type
GALNT7	TF binding region
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1812790	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55668552	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55848625	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6817741	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6840382	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872505	0.85[AMR][1000 genomes]
rs73872508	0.85[AMR][1000 genomes]
rs73872532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872537	0.85[AMR][1000 genomes]
rs73872540	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872541	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872542	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872543	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872545	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872549	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872550	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73872551	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7662281	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7666228	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7675672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7684771	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7684941	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7684968	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174196800-174210000	Weak transcription	Gastric	stomach
2	chr4:174201600-174211200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:174203200-174214800	Weak transcription	Pancreas	Pancrea
4	chr4:174206200-174229000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
6	chr4:174207800-174232600	Weak transcription	Ovary	ovary
7	chr4:174208200-174210000	Weak transcription	Small Intestine	intestine
8	chr4:174208600-174214800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:174208800-174210000	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:174208800-174214800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:174208800-174230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:174209000-174210000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:174209000-174210000	Weak transcription	Stomach Mucosa	stomach
14	chr4:174209000-174212200	Weak transcription	Primary B cells from cord blood	blood
15	chr4:174209000-174214600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:174209000-174214800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:174209000-174214800	Weak transcription	Aorta	Aorta
18	chr4:174209000-174214800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr4:174209000-174215000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:174209000-174216000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:174209000-174216200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:174209000-174218600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr4:174209000-174218800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr4:174209000-174220600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:174209000-174223000	Weak transcription	HSMM	muscle
26	chr4:174209000-174223600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:174209000-174225200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr4:174209000-174228600	Weak transcription	Esophagus	oesophagus
29	chr4:174209000-174233400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:174209000-174235000	Weak transcription	Colonic Mucosa	Colon
31	chr4:174209200-174210000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:174209200-174210600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr4:174209200-174214800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr4:174209200-174216400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr4:174209200-174217600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr4:174209200-174226800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr4:174209600-174210200	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr4:174209600-174210200	Flanking Active TSS	Thymus	Thymus
39	chr4:174209600-174210200	Enhancers	Dnd41	blood
40	chr4:174209600-174210800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:174209600-174210800	Flanking Active TSS	Fetal Thymus	thymus
42	chr4:174209600-174211000	Flanking Active TSS	K562	blood
43	chr4:174209800-174210000	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr4:174209800-174210000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr4:174209800-174210000	Enhancers	Primary T cells from cord blood	blood
46	chr4:174209800-174210000	Enhancers	Primary hematopoietic stem cells	blood
47	chr4:174209800-174210000	Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr4:174209800-174210000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr4:174209800-174210000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr4:174209800-174210000	Enhancers	Brain Anterior Caudate	brain

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