Variant report

Variant	rs55671828
Chromosome Location	chr10:45153189-45153190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11814181	1.00[AMR][1000 genomes]
rs11816437	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11818541	1.00[AMR][1000 genomes]
rs11819677	1.00[AMR][1000 genomes]
rs56882503	1.00[AMR][1000 genomes]
rs58076062	1.00[AMR][1000 genomes]
rs60838225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73281344	1.00[AMR][1000 genomes]
rs73281355	1.00[AMR][1000 genomes]
rs73281358	1.00[AMR][1000 genomes]
rs73281371	1.00[AMR][1000 genomes]
rs73281394	1.00[AMR][1000 genomes]
rs74138457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45147800-45154800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:45148000-45155600	Weak transcription	Osteobl	bone
3	chr10:45152400-45154600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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