Variant report

Variant	rs58076062
Chromosome Location	chr10:45046291-45046292
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11814181	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11816437	1.00[AMR][1000 genomes]
rs11816959	1.00[AMR][1000 genomes]
rs11818541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55671828	1.00[AMR][1000 genomes]
rs56882503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60838225	1.00[AMR][1000 genomes]
rs7074823	0.92[EUR][1000 genomes]
rs73281344	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281355	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281358	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281361	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73281365	1.00[EUR][1000 genomes]
rs73281371	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73281394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138457	1.00[AMR][1000 genomes]
rs74138459	1.00[AMR][1000 genomes]
rs7897972	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45044600-45070200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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