Variant report

Variant	rs55675285
Chromosome Location	chr5:167531222-167531223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:52451468..52454376-chr5:167530602..167532430,2	MCF-7	breast:
2	chr5:167527475..167530414-chr5:167530458..167532043,2	K562	blood:
3	chr5:167530827..167533333-chr5:167637920..167639619,2	K562	blood:
4	chr5:167528914..167530429-chr5:167530458..167532101,2	K562	blood:
5	chr1:225918372..225920081-chr5:167531170..167532671,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12656958	0.89[ASN][1000 genomes]
rs1432821	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2163764	0.81[ASN][1000 genomes]
rs35832334	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59563471	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6866450	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6867056	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72824998	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72824999	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72833198	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7722031	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167513800-167536000	Weak transcription	NHDF-Ad	bronchial
2	chr5:167514200-167531400	Weak transcription	HSMM	muscle
3	chr5:167516200-167538400	Weak transcription	HMEC	breast
4	chr5:167516600-167532000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:167517400-167539400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:167519200-167534800	Weak transcription	Esophagus	oesophagus
7	chr5:167524800-167532800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:167525400-167531400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:167525800-167532000	Weak transcription	Fetal Kidney	kidney
10	chr5:167526600-167536800	Weak transcription	Left Ventricle	heart
11	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
12	chr5:167528600-167532000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167529200-167533800	Strong transcription	NHEK	skin
14	chr5:167530400-167531600	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr5:167530400-167531800	Enhancers	Colonic Mucosa	Colon
16	chr5:167530600-167531400	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr5:167530600-167531400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr5:167530600-167532600	Genic enhancers	Right Ventricle	heart
19	chr5:167530600-167533000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:167530800-167531600	Enhancers	Duodenum Mucosa	Duodenum
21	chr5:167530800-167532200	Enhancers	Fetal Muscle Trunk	muscle
22	chr5:167530800-167533400	Enhancers	Fetal Muscle Leg	muscle
23	chr5:167530800-167534000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr5:167531000-167531400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:167531000-167531400	Weak transcription	Fetal Lung	lung
26	chr5:167531200-167532800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr5:167531200-167533200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:167531200-167533600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr5:167531200-167533800	Enhancers	HSMMtube	muscle
30	chr5:167531200-167534200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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