Variant report

Variant	rs6866450
Chromosome Location	chr5:167534846-167534847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167534684..167536945-chr5:167537584..167539652,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13155210	0.82[JPT][hapmap]
rs1432821	0.94[CEU][hapmap];0.94[GIH][hapmap];0.80[TSI][hapmap];0.89[EUR][1000 genomes]
rs35832334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55675285	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59563471	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6867056	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72824998	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72824999	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72833198	0.86[EUR][1000 genomes]
rs7722031	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167513800-167536000	Weak transcription	NHDF-Ad	bronchial
2	chr5:167516200-167538400	Weak transcription	HMEC	breast
3	chr5:167517400-167539400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:167526600-167536800	Weak transcription	Left Ventricle	heart
5	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
6	chr5:167531800-167535000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167532000-167544800	Weak transcription	Gastric	stomach
8	chr5:167532400-167536200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:167532600-167536800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:167532600-167542600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
12	chr5:167532800-167536800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:167533200-167537400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167533400-167537400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:167533400-167537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:167533400-167538000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:167533600-167536800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:167533600-167537200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:167533600-167540000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:167533800-167538200	Weak transcription	NHEK	skin
21	chr5:167533800-167559200	Weak transcription	NH-A	brain
22	chr5:167534000-167535600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:167534000-167537200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:167534000-167537200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr5:167534000-167537400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr5:167534000-167545200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:167534200-167536600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:167534200-167537800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:167534800-167535000	Enhancers	Esophagus	oesophagus
31	chr5:167534800-167535200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:167534800-167536000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:167534800-167536000	Weak transcription	HSMM	muscle

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