Variant report

Variant	rs1432821
Chromosome Location	chr5:167563585-167563586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2163764	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2569040	0.89[YRI][hapmap]
rs35832334	0.91[EUR][1000 genomes]
rs55675285	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59563471	0.82[EUR][1000 genomes]
rs6866450	0.94[CEU][hapmap];0.94[GIH][hapmap];0.80[TSI][hapmap];0.89[EUR][1000 genomes]
rs6867056	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72824998	0.92[EUR][1000 genomes]
rs72824999	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72833198	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7722031	1.00[CEU][hapmap];0.94[GIH][hapmap];0.83[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];0.96[TSI][hapmap];0.89[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
3	chr5:167555600-167563800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:167555800-167576000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:167556000-167580400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:167556200-167567000	Weak transcription	Right Ventricle	heart
7	chr5:167557200-167567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:167558800-167565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167559800-167564200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:167560000-167566600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:167560000-167568400	Weak transcription	HSMMtube	muscle
12	chr5:167560000-167592200	Weak transcription	HSMM	muscle
13	chr5:167561800-167568400	Strong transcription	NHEK	skin
14	chr5:167563000-167564000	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr5:167563000-167564000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr5:167563000-167564200	Enhancers	Pancreas	Pancrea
17	chr5:167563200-167563800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:167563200-167563800	Enhancers	HepG2	liver
19	chr5:167563200-167564400	Enhancers	Liver	Liver
20	chr5:167563200-167564600	Enhancers	Stomach Mucosa	stomach
21	chr5:167563200-167565000	Enhancers	Duodenum Mucosa	Duodenum
22	chr5:167563400-167563600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:167563400-167563800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr5:167563400-167564200	Enhancers	Left Ventricle	heart
25	chr5:167563400-167564200	Enhancers	Right Atrium	heart
26	chr5:167563400-167564600	Enhancers	GM12878-XiMat	blood
27	chr5:167563400-167564800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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