Variant report

Variant	rs2569040
Chromosome Location	chr5:167537605-167537606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167534684..167536945-chr5:167537584..167539652,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10076597	0.89[ASN][1000 genomes]
rs1077046	0.92[CHD][hapmap]
rs1077047	0.86[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11955988	0.84[ASN][1000 genomes]
rs12186726	0.92[CHD][hapmap]
rs12187313	0.88[CHD][hapmap]
rs12188893	0.92[CHD][hapmap]
rs1432821	0.89[YRI][hapmap]
rs1529681	0.88[CHD][hapmap]
rs1529684	0.88[CHD][hapmap]
rs1897558	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1964376	0.86[ASN][1000 genomes]
rs2337119	0.84[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2337120	0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2569036	0.85[CHB][hapmap];0.90[CHD][hapmap];0.88[ASN][1000 genomes]
rs2569049	0.84[CHB][hapmap];0.95[CHD][hapmap]
rs2569052	0.90[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3101758	0.95[CHD][hapmap];0.81[ASN][1000 genomes]
rs4404700	0.92[CHD][hapmap]
rs4976574	0.81[CHD][hapmap]
rs6867056	0.89[YRI][hapmap]
rs6885364	0.85[CHD][hapmap]
rs7706234	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7708643	0.84[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs7712718	0.88[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs891931	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs919738	0.88[CHD][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167516200-167538400	Weak transcription	HMEC	breast
2	chr5:167517400-167539400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
4	chr5:167532000-167544800	Weak transcription	Gastric	stomach
5	chr5:167532600-167542600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
7	chr5:167533400-167537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167533400-167538000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:167533600-167540000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:167533800-167538200	Weak transcription	NHEK	skin
11	chr5:167533800-167559200	Weak transcription	NH-A	brain
12	chr5:167534000-167545200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:167534200-167537800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:167535200-167538000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:167535800-167538200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:167536000-167537800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:167536600-167538200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:167536800-167537800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr5:167536800-167538400	Strong transcription	Left Ventricle	heart
21	chr5:167536800-167538600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:167536800-167538800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:167537000-167538200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:167537000-167544800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr5:167537000-167550800	Weak transcription	HSMM	muscle
26	chr5:167537200-167537800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr5:167537200-167537800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr5:167537200-167538400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr5:167537400-167538600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:167537400-167538800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:167537400-167538800	Enhancers	Primary hematopoietic stem cells	blood

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