Variant report

Variant	rs1077046
Chromosome Location	chr5:167546025-167546026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167545828..167548111-chr5:167549692..167551736,2	K562	blood:
2	chr5:167544039..167546875-chr5:167552136..167554932,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PANK3-16	chr5:167545694-167547302	ucscGeneNc_uc003lzs_1

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1077047	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs11134488	0.83[ASN][1000 genomes]
rs11740665	0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11741507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11741618	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11747227	0.93[ASN][1000 genomes]
rs11747283	0.93[ASN][1000 genomes]
rs11748226	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11951377	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12153437	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12186523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12186726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12186727	0.92[ASN][1000 genomes]
rs12187313	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12187477	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1529681	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1529683	0.89[ASN][1000 genomes]
rs1529684	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1897558	0.92[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2337119	0.87[CHD][hapmap]
rs2337120	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2569036	0.82[CHD][hapmap]
rs2569040	0.92[CHD][hapmap]
rs2569049	0.87[CHD][hapmap]
rs2569052	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs3101758	0.87[CHD][hapmap]
rs36001918	0.83[ASN][1000 genomes]
rs3748	0.87[ASN][1000 genomes]
rs4404700	0.81[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4976571	0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4976572	0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4976574	0.85[CHD][hapmap]
rs4976575	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57005148	0.90[ASN][1000 genomes]
rs6555783	0.81[ASN][1000 genomes]
rs6862251	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6863691	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6876251	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6885364	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7706234	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs7708643	0.87[CHD][hapmap];0.81[JPT][hapmap]
rs7712718	0.86[CHB][hapmap];0.95[CHD][hapmap];0.81[ASN][1000 genomes]
rs891931	0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs919737	0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs919738	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs984228	0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1077046	STK10	cis	parietal	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
2	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
3	chr5:167533800-167559200	Weak transcription	NH-A	brain
4	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167537000-167550800	Weak transcription	HSMM	muscle
6	chr5:167541400-167550600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167542600-167547000	Strong transcription	NHEK	skin
8	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167543800-167546400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:167544200-167546600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:167544600-167547000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:167544800-167546200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:167544800-167546200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:167544800-167546600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:167544800-167547000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
17	chr5:167545000-167546200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr5:167545000-167546400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr5:167545000-167546400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr5:167545000-167546400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr5:167545000-167546400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr5:167545000-167546600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:167545200-167546200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr5:167545200-167546400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr5:167545200-167546400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr5:167545600-167546400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:167545600-167550600	Weak transcription	Left Ventricle	heart
28	chr5:167545600-167551000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr5:167545600-167551800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:167545600-167551800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:167545600-167552800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:167546000-167546600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:167546000-167549000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:167546000-167550400	Weak transcription	Monocytes-CD14+_RO01746	blood

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