Variant report

Variant	rs4976575
Chromosome Location	chr5:167559623-167559624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1077046	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1077047	0.84[JPT][hapmap]
rs11740665	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11741507	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11741618	0.83[CEU][hapmap];0.96[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11747227	0.86[ASN][1000 genomes]
rs11747283	0.86[ASN][1000 genomes]
rs11748226	1.00[CEU][hapmap];0.96[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11951377	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12153437	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12186523	0.96[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12186726	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12186727	0.81[ASN][1000 genomes]
rs12187313	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12187477	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12188893	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1529681	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1529683	0.86[ASN][1000 genomes]
rs1529684	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1897558	0.86[JPT][hapmap]
rs2337120	0.93[CEU][hapmap];0.81[CHB][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2569052	0.84[JPT][hapmap]
rs3748	0.86[ASN][1000 genomes]
rs4246812	0.84[JPT][hapmap]
rs4404700	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4976571	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4976572	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4976573	0.83[JPT][hapmap]
rs4976574	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs57005148	0.84[ASN][1000 genomes]
rs6862251	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6863691	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6876251	0.96[CEU][hapmap];0.96[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6885364	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs891931	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs919737	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs919738	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs984228	0.83[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
3	chr5:167555600-167563800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:167555800-167563400	Weak transcription	Left Ventricle	heart
5	chr5:167555800-167576000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:167556000-167580400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167556200-167563400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167556200-167567000	Weak transcription	Right Ventricle	heart
9	chr5:167556600-167561800	Weak transcription	NHEK	skin
10	chr5:167557200-167567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:167558000-167560000	Enhancers	HSMMtube	muscle
12	chr5:167558200-167559800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:167558200-167560000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167558200-167560000	Enhancers	HSMM	muscle
15	chr5:167558800-167560000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:167558800-167560400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:167558800-167565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:167559000-167560000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:167559200-167560000	Enhancers	NH-A	brain

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