Variant report

Variant	rs6885364
Chromosome Location	chr5:167555816-167555817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1077046	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1077047	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11740665	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11741507	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11741618	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11747227	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11747283	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11748226	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11951377	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12153437	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12186523	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12186726	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12186727	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12187313	0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12187477	0.90[ASN][1000 genomes]
rs12188893	0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1529681	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529683	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529684	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1560650	0.81[EUR][1000 genomes]
rs1897558	0.85[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2337119	0.81[CHD][hapmap]
rs2337120	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2569036	0.85[CHD][hapmap]
rs2569040	0.85[CHD][hapmap]
rs2569049	0.81[CHD][hapmap]
rs2569052	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs3101758	0.81[CHD][hapmap]
rs36001918	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3748	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4246812	0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs4404700	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4976571	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4976572	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4976573	0.82[ASN][1000 genomes]
rs4976574	0.83[CHD][hapmap]
rs4976575	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs57005148	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6862251	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6863691	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6876251	0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7706234	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7708643	0.90[CHD][hapmap];0.81[JPT][hapmap]
rs7712718	0.96[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs891931	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs919737	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs919738	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs984228	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167533800-167559200	Weak transcription	NH-A	brain
2	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
4	chr5:167549600-167556000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167551400-167556600	Strong transcription	NHEK	skin
6	chr5:167551600-167559000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:167551800-167556000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:167553200-167558800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167554200-167556600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:167554600-167556400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:167554800-167556200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:167554800-167556200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:167554800-167556400	Enhancers	HSMMtube	muscle
14	chr5:167554800-167557200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:167555000-167556000	Enhancers	Brain Cingulate Gyrus	brain
16	chr5:167555000-167556000	Enhancers	Brain Hippocampus Middle	brain
17	chr5:167555000-167556200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:167555000-167556400	Enhancers	Aorta	Aorta
19	chr5:167555200-167556000	Enhancers	Fetal Muscle Trunk	muscle
20	chr5:167555200-167556200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:167555200-167556400	Enhancers	Brain Germinal Matrix	brain
22	chr5:167555600-167556000	Enhancers	Right Atrium	heart
23	chr5:167555600-167556200	Enhancers	Fetal Muscle Leg	muscle
24	chr5:167555600-167556200	Enhancers	HSMM	muscle
25	chr5:167555600-167563800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr5:167555800-167556200	Enhancers	Fetal Brain Female	brain
27	chr5:167555800-167556200	Strong transcription	Right Ventricle	heart
28	chr5:167555800-167556600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:167555800-167563400	Weak transcription	Left Ventricle	heart
30	chr5:167555800-167576000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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