Variant report

Variant	rs1560650
Chromosome Location	chr5:167554106-167554107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167550663..167552531-chr5:167552754..167554285,2	K562	blood:
2	chr5:167544039..167546875-chr5:167552136..167554932,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11740665	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11747227	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11747283	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11951377	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12153437	0.95[YRI][hapmap]
rs1529681	0.93[ASW][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1529683	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1529684	0.93[ASW][hapmap];0.81[MKK][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4976571	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4976572	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs57005148	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6862251	0.95[YRI][hapmap]
rs6863691	0.83[YRI][hapmap];0.81[EUR][1000 genomes]
rs6885364	0.81[EUR][1000 genomes]
rs7712718	0.81[ASW][hapmap];0.83[YRI][hapmap]
rs919737	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs919738	0.93[ASW][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs984228	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167533800-167559200	Weak transcription	NH-A	brain
2	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
4	chr5:167546200-167554200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:167546400-167554600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:167546400-167555000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:167546600-167555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:167549000-167554200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:167549600-167556000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167550600-167555800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:167551200-167555000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:167551400-167554800	Weak transcription	HSMM	muscle
13	chr5:167551400-167556600	Strong transcription	NHEK	skin
14	chr5:167551600-167554800	Weak transcription	HSMMtube	muscle
15	chr5:167551600-167559000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:167551800-167556000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:167552000-167555600	Weak transcription	Right Atrium	heart
18	chr5:167552200-167555000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:167553200-167555200	Strong transcription	Right Ventricle	heart
20	chr5:167553200-167558800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:167553800-167554200	Strong transcription	Left Ventricle	heart

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