Variant report

Variant	rs11740665
Chromosome Location	chr5:167548854-167548855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1077046	0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1077047	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11741507	0.86[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11741618	0.86[CHB][hapmap];0.96[JPT][hapmap];0.87[ASN][1000 genomes]
rs11747227	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748226	0.81[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs11951377	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12153437	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12186523	0.86[CHB][hapmap];0.96[JPT][hapmap];0.91[ASN][1000 genomes]
rs12186726	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12186727	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12187313	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12187477	0.92[ASN][1000 genomes]
rs12188893	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1529681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529683	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1560650	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1897558	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2337120	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs2569052	0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs36001918	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3748	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4246812	0.90[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs4404700	0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4976571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4976572	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4976573	0.82[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs4976574	0.82[JPT][hapmap]
rs4976575	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs57005148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6862251	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6863691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6876251	0.81[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs6885364	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7706234	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7712718	0.96[CEU][hapmap];0.90[CHB][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs891931	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs919737	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs984228	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
2	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
3	chr5:167533800-167559200	Weak transcription	NH-A	brain
4	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167537000-167550800	Weak transcription	HSMM	muscle
6	chr5:167541400-167550600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
9	chr5:167545600-167550600	Weak transcription	Left Ventricle	heart
10	chr5:167545600-167551000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:167545600-167551800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:167545600-167551800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:167545600-167552800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:167546000-167549000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:167546000-167550400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr5:167546200-167554200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:167546400-167550400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:167546400-167554600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:167546400-167555000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr5:167546600-167550600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:167546600-167555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:167547000-167550600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr5:167547000-167550800	Weak transcription	NHEK	skin
24	chr5:167548800-167551000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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