Variant report

Variant	rs891931
Chromosome Location	chr5:167536756-167536757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167534684..167536945-chr5:167537584..167539652,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1077046	0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11740665	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs11741507	0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11741618	0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11747227	0.80[ASN][1000 genomes]
rs11747283	0.80[ASN][1000 genomes]
rs11748226	0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11951377	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs12153437	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs12186523	0.95[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12186726	0.95[CHB][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12187313	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs12187477	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12188893	0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1529681	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs1529683	0.80[ASN][1000 genomes]
rs1529684	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs2337120	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2569040	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs36001918	0.86[ASN][1000 genomes]
rs4404700	0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4976571	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs4976572	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs4976575	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6862251	0.91[CHB][hapmap]
rs6863691	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs6876251	0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6885364	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7706234	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7712718	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs919737	0.85[CHB][hapmap]
rs919738	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs984228	0.81[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167516200-167538400	Weak transcription	HMEC	breast
2	chr5:167517400-167539400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:167526600-167536800	Weak transcription	Left Ventricle	heart
4	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
5	chr5:167532000-167544800	Weak transcription	Gastric	stomach
6	chr5:167532600-167536800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:167532600-167542600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
9	chr5:167532800-167536800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:167533200-167537400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:167533400-167537400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:167533400-167537800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:167533400-167538000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr5:167533600-167536800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:167533600-167537200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:167533600-167540000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:167533800-167538200	Weak transcription	NHEK	skin
18	chr5:167533800-167559200	Weak transcription	NH-A	brain
19	chr5:167534000-167537200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:167534000-167537200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:167534000-167537400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:167534000-167545200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr5:167534200-167537800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:167535200-167538000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:167535800-167538200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:167536000-167537000	Enhancers	HSMM	muscle
28	chr5:167536000-167537800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:167536400-167536800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:167536400-167537000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr5:167536600-167537000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr5:167536600-167537000	Enhancers	NHDF-Ad	bronchial
33	chr5:167536600-167538200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links