Variant report

Variant	rs1529681
Chromosome Location	chr5:167553371-167553372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167550663..167552531-chr5:167552754..167554285,2	K562	blood:
2	chr5:167544039..167546875-chr5:167552136..167554932,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1077046	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1077047	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11134488	0.80[ASN][1000 genomes]
rs11740665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11741507	0.86[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs11741618	0.85[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11747227	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11747283	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11748226	0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11951377	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12153437	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12186523	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12186726	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12186727	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12187313	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12187477	0.91[ASN][1000 genomes]
rs12188893	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1529683	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529684	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1560650	0.93[ASW][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1897558	0.88[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2337119	0.83[CHD][hapmap]
rs2337120	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs2569036	0.87[CHD][hapmap]
rs2569040	0.88[CHD][hapmap]
rs2569049	0.83[CHD][hapmap]
rs2569052	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs3101758	0.83[CHD][hapmap]
rs36001918	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3748	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4246812	0.86[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs4404700	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4976571	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4976572	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4976573	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs4976574	0.80[CHD][hapmap];0.82[JPT][hapmap]
rs4976575	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs57005148	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6555783	0.81[ASN][1000 genomes]
rs6862251	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6863691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6876251	0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6885364	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7706234	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7708643	0.92[CHD][hapmap]
rs7712718	0.87[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs891931	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs919737	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs919738	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs984228	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167533800-167559200	Weak transcription	NH-A	brain
2	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
4	chr5:167546200-167554200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:167546400-167554600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:167546400-167555000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:167546600-167555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:167549000-167554200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:167549600-167556000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167550600-167555800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:167551200-167555000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:167551400-167554800	Weak transcription	HSMM	muscle
13	chr5:167551400-167556600	Strong transcription	NHEK	skin
14	chr5:167551600-167554800	Weak transcription	HSMMtube	muscle
15	chr5:167551600-167559000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:167551800-167556000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:167552000-167555600	Weak transcription	Right Atrium	heart
18	chr5:167552200-167555000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:167552800-167553400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:167552800-167553400	Enhancers	Fetal Heart	heart
21	chr5:167553200-167553800	Weak transcription	Left Ventricle	heart
22	chr5:167553200-167555200	Strong transcription	Right Ventricle	heart
23	chr5:167553200-167558800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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