Variant report

Variant	rs2569049
Chromosome Location	chr5:167545075-167545076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167544039..167546875-chr5:167552136..167554932,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1077046	0.87[CHD][hapmap]
rs1077047	0.89[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs11134488	0.86[ASN][1000 genomes]
rs12186726	0.87[CHD][hapmap]
rs12187313	0.83[CHD][hapmap]
rs12188893	0.87[CHD][hapmap]
rs1529681	0.83[CHD][hapmap]
rs1529684	0.83[CHD][hapmap]
rs1897558	0.95[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2244626	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2337119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.80[MEX][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2569036	0.84[CHD][hapmap]
rs2569040	0.84[CHB][hapmap];0.95[CHD][hapmap]
rs2569052	0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2617969	0.89[ASN][1000 genomes]
rs2617970	0.87[ASN][1000 genomes]
rs2617971	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3101758	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.92[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4246812	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs4404700	0.87[CHD][hapmap]
rs4976536	0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes]
rs4976569	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4976573	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4976574	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs6555783	0.85[ASN][1000 genomes]
rs6885364	0.81[CHD][hapmap]
rs7708643	0.90[CHD][hapmap]
rs7712718	0.83[CHD][hapmap]
rs919738	0.83[CHD][hapmap]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
2	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
3	chr5:167533800-167559200	Weak transcription	NH-A	brain
4	chr5:167534000-167545200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:167537000-167550800	Weak transcription	HSMM	muscle
7	chr5:167537800-167545200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:167541400-167550600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167542600-167547000	Strong transcription	NHEK	skin
10	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:167543800-167546400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:167544000-167545200	Weak transcription	Lung	lung
13	chr5:167544200-167546600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:167544600-167545600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:167544600-167545800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:167544600-167547000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:167544800-167545400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:167544800-167545600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:167544800-167545600	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr5:167544800-167545600	Enhancers	Gastric	stomach
21	chr5:167544800-167545600	Genic enhancers	Left Ventricle	heart
22	chr5:167544800-167546200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:167544800-167546200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:167544800-167546600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr5:167544800-167547000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
27	chr5:167545000-167545400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:167545000-167545400	Bivalent Enhancer	HepG2	liver
29	chr5:167545000-167545600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:167545000-167545600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:167545000-167545600	Enhancers	Pancreas	Pancrea
32	chr5:167545000-167546000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr5:167545000-167546200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr5:167545000-167546400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr5:167545000-167546400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr5:167545000-167546400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr5:167545000-167546400	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr5:167545000-167546600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links