Variant report

Variant	rs4976536
Chromosome Location	chr5:167566707-167566708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2244626	0.94[AMR][1000 genomes]
rs2337119	0.80[MEX][hapmap];0.83[AMR][1000 genomes]
rs2569049	0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes]
rs2617971	0.89[JPT][hapmap];0.89[AMR][1000 genomes]
rs3101758	0.80[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes]
rs4246812	0.82[JPT][hapmap]
rs4976569	1.00[ASW][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4976573	0.81[JPT][hapmap]
rs4976574	0.87[CHD][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167555800-167576000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:167556000-167580400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167556200-167567000	Weak transcription	Right Ventricle	heart
4	chr5:167557200-167567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:167560000-167568400	Weak transcription	HSMMtube	muscle
6	chr5:167560000-167592200	Weak transcription	HSMM	muscle
7	chr5:167561800-167568400	Strong transcription	NHEK	skin
8	chr5:167563800-167580200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:167564200-167567400	Weak transcription	Right Atrium	heart
10	chr5:167564600-167567000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:167564600-167567000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:167564600-167567200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:167564600-167567200	Weak transcription	Stomach Mucosa	stomach
14	chr5:167564600-167567400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:167564800-167566800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:167564800-167567200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:167564800-167573200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:167565000-167567000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:167565000-167568000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:167565000-167580000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr5:167565600-167570200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:167566400-167567600	Enhancers	Left Ventricle	heart
23	chr5:167566600-167566800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:167566600-167567200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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