Variant report

Variant	rs4976569
Chromosome Location	chr5:167524395-167524396
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2244626	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2337119	0.87[CEU][hapmap];0.82[CHB][hapmap];0.80[MEX][hapmap];0.82[AMR][1000 genomes]
rs2569049	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2617971	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3101758	0.87[CEU][hapmap];0.89[CHB][hapmap];0.94[MEX][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4976536	1.00[ASW][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6859101	0.80[GIH][hapmap]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167513800-167536000	Weak transcription	NHDF-Ad	bronchial
2	chr5:167514000-167531200	Weak transcription	HSMMtube	muscle
3	chr5:167514200-167524400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167514200-167531400	Weak transcription	HSMM	muscle
5	chr5:167516200-167538400	Weak transcription	HMEC	breast
6	chr5:167516600-167532000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:167517400-167529200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167517400-167539400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167519200-167534800	Weak transcription	Esophagus	oesophagus
10	chr5:167520000-167524800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:167520600-167526200	Weak transcription	Fetal Heart	heart
12	chr5:167521200-167525200	Weak transcription	Fetal Kidney	kidney
13	chr5:167521600-167529400	Weak transcription	Fetal Lung	lung
14	chr5:167522000-167524800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:167522000-167525000	Weak transcription	Left Ventricle	heart
16	chr5:167522400-167524600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:167522400-167530600	Weak transcription	Right Ventricle	heart
18	chr5:167523000-167524800	Weak transcription	NHEK	skin
19	chr5:167523600-167524800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:167524200-167525200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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