Variant report

Variant	rs1897558
Chromosome Location	chr5:167552605-167552606
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167544039..167546875-chr5:167552136..167554932,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10076597	0.84[ASN][1000 genomes]
rs1077046	0.92[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1077047	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11740665	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs11741507	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11741618	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11747227	0.84[ASN][1000 genomes]
rs11747283	0.84[ASN][1000 genomes]
rs11748226	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs11951377	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs11955988	0.80[ASN][1000 genomes]
rs12153437	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12186523	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs12186726	0.92[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs12186727	0.83[ASN][1000 genomes]
rs12187313	0.88[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12187477	0.87[ASN][1000 genomes]
rs12188893	0.92[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1529681	0.88[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1529683	0.85[ASN][1000 genomes]
rs1529684	0.88[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2337119	0.95[CHD][hapmap]
rs2569036	0.90[CHD][hapmap];0.83[ASN][1000 genomes]
rs2569040	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.83[MEX][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2569049	0.95[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2569052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2617971	0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs3101758	0.95[CHD][hapmap]
rs3748	0.82[ASN][1000 genomes]
rs4404700	0.92[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs4976571	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4976572	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4976574	0.81[CHD][hapmap]
rs4976575	0.86[JPT][hapmap]
rs57005148	0.81[ASN][1000 genomes]
rs6862251	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs6863691	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6876251	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6885364	0.85[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7708643	0.95[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7712718	0.88[CHD][hapmap]
rs919737	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs919738	0.88[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs984228	0.84[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
2	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
3	chr5:167533800-167559200	Weak transcription	NH-A	brain
4	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
6	chr5:167545600-167552800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:167546200-167554200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:167546400-167554600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:167546400-167555000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:167546600-167555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:167549000-167554200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:167549600-167556000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167550600-167553200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:167550600-167553200	Enhancers	Left Ventricle	heart
15	chr5:167550600-167555800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:167551200-167555000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:167551400-167554800	Weak transcription	HSMM	muscle
18	chr5:167551400-167556600	Strong transcription	NHEK	skin
19	chr5:167551600-167554800	Weak transcription	HSMMtube	muscle
20	chr5:167551600-167559000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:167551800-167556000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:167552000-167555600	Weak transcription	Right Atrium	heart
23	chr5:167552200-167555000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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