Variant report

Variant	rs919738
Chromosome Location	chr5:167551503-167551504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167545828..167548111-chr5:167549692..167551736,2	K562	blood:
2	chr5:167550663..167552531-chr5:167552754..167554285,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1077046	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1077047	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs11740665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11741507	0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs11741618	0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs11747227	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11747283	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11748226	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11951377	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12153437	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12186523	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12186726	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12186727	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12187313	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12187477	0.91[ASN][1000 genomes]
rs12188893	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1529681	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.90[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529683	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529684	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1560650	0.93[ASW][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1897558	0.88[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2337119	0.83[CHD][hapmap]
rs2337120	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2569036	0.87[CHD][hapmap]
rs2569040	0.88[CHD][hapmap]
rs2569049	0.83[CHD][hapmap]
rs2569052	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs3101758	0.83[CHD][hapmap]
rs36001918	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3748	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4246812	0.86[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs4404700	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4976571	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976572	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4976573	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4976574	0.80[CHD][hapmap];0.82[JPT][hapmap]
rs4976575	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs57005148	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6862251	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6863691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6876251	0.81[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6885364	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7706234	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7708643	0.92[CHD][hapmap]
rs7712718	0.87[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs891931	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs919737	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs984228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
2	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
3	chr5:167533800-167559200	Weak transcription	NH-A	brain
4	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
6	chr5:167545600-167551800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167545600-167551800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:167545600-167552800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:167546200-167554200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:167546400-167554600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:167546400-167555000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:167546600-167555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:167549000-167554200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167549600-167556000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:167550400-167552000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr5:167550400-167552400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr5:167550600-167553200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:167550600-167553200	Enhancers	Left Ventricle	heart
19	chr5:167550600-167555800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:167550800-167551600	Enhancers	HSMMtube	muscle
21	chr5:167551000-167551600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:167551000-167551600	Enhancers	Brain Anterior Caudate	brain
23	chr5:167551200-167551600	Enhancers	GM12878-XiMat	blood
24	chr5:167551200-167555000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:167551400-167554800	Weak transcription	HSMM	muscle
26	chr5:167551400-167556600	Strong transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links