Variant report

Variant	rs3748
Chromosome Location	chr5:167557345-167557346
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WWC1-4	chr5:167555861-167557427	NONHSAT104981

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1077046	0.87[ASN][1000 genomes]
rs11740665	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11741507	0.90[ASN][1000 genomes]
rs11741618	0.87[ASN][1000 genomes]
rs11747227	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11747283	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11748226	0.90[ASN][1000 genomes]
rs11951377	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12153437	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12186523	0.91[ASN][1000 genomes]
rs12186726	0.88[ASN][1000 genomes]
rs12186727	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12187313	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12187477	0.88[ASN][1000 genomes]
rs12188893	0.91[ASN][1000 genomes]
rs1529681	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1529683	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1529684	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1897558	0.82[ASN][1000 genomes]
rs36001918	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4246812	0.84[ASN][1000 genomes]
rs4404700	0.93[ASN][1000 genomes]
rs4976571	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4976572	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4976573	0.83[ASN][1000 genomes]
rs4976575	0.86[ASN][1000 genomes]
rs57005148	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6862251	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6863691	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6876251	0.90[ASN][1000 genomes]
rs6885364	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7706234	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7712718	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs919737	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs919738	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs984228	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167533800-167559200	Weak transcription	NH-A	brain
2	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
4	chr5:167551600-167559000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:167553200-167558800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:167555600-167563800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:167555800-167563400	Weak transcription	Left Ventricle	heart
8	chr5:167555800-167576000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:167556000-167558800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167556000-167580400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:167556200-167558200	Weak transcription	HSMM	muscle
12	chr5:167556200-167563400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:167556200-167567000	Weak transcription	Right Ventricle	heart
14	chr5:167556400-167558000	Weak transcription	HSMMtube	muscle
15	chr5:167556400-167558200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:167556600-167561800	Weak transcription	NHEK	skin
17	chr5:167556800-167558200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:167557200-167567000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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