Variant report

Variant	rs11951377
Chromosome Location	chr5:167555166-167555167
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1077046	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1077047	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11740665	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11741507	0.87[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs11741618	0.86[CHB][hapmap];0.96[JPT][hapmap];0.89[ASN][1000 genomes]
rs11747227	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11747283	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11748226	0.81[CHB][hapmap];0.96[JPT][hapmap];0.92[ASN][1000 genomes]
rs12153437	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12186523	0.86[CHB][hapmap];0.96[JPT][hapmap];0.92[ASN][1000 genomes]
rs12186726	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12186727	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12187313	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12187477	0.89[ASN][1000 genomes]
rs12188893	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1529681	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1529683	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1529684	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1560650	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1897558	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2337120	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs2569052	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs36001918	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3748	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4246812	0.86[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs4404700	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4976571	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4976572	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4976573	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs4976574	0.82[JPT][hapmap]
rs4976575	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs57005148	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6862251	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6863691	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6876251	0.82[CHB][hapmap];0.96[JPT][hapmap];0.92[ASN][1000 genomes]
rs6885364	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7706234	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7712718	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs891931	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs919737	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs919738	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs984228	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167533800-167559200	Weak transcription	NH-A	brain
2	chr5:167542800-167564800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:167544800-167564400	Weak transcription	Fetal Lung	lung
4	chr5:167549600-167556000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167550600-167555800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:167551400-167556600	Strong transcription	NHEK	skin
7	chr5:167551600-167559000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:167551800-167556000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:167552000-167555600	Weak transcription	Right Atrium	heart
10	chr5:167553200-167555200	Strong transcription	Right Ventricle	heart
11	chr5:167553200-167558800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:167554200-167556600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:167554600-167555800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167554600-167556400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:167554800-167555400	Enhancers	HSMM	muscle
16	chr5:167554800-167555600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr5:167554800-167555800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:167554800-167555800	Genic enhancers	Left Ventricle	heart
19	chr5:167554800-167556200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:167554800-167556200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:167554800-167556400	Enhancers	HSMMtube	muscle
22	chr5:167554800-167557200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:167555000-167555200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:167555000-167555200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr5:167555000-167555600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr5:167555000-167555600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr5:167555000-167555600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:167555000-167555800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr5:167555000-167555800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr5:167555000-167555800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:167555000-167556000	Enhancers	Brain Cingulate Gyrus	brain
32	chr5:167555000-167556000	Enhancers	Brain Hippocampus Middle	brain
33	chr5:167555000-167556200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr5:167555000-167556400	Enhancers	Aorta	Aorta

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