Variant report

Variant	rs2337120
Chromosome Location	chr5:167538650-167538651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167534684..167536945-chr5:167537584..167539652,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1077046	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11740665	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs11741507	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11741618	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11747227	0.80[ASN][1000 genomes]
rs11747283	0.80[ASN][1000 genomes]
rs11748226	0.93[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11951377	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs12153437	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs12186523	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12186726	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12187313	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs12187477	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12188893	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1529681	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs1529683	0.80[ASN][1000 genomes]
rs1529684	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2569040	0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs36001918	0.86[ASN][1000 genomes]
rs4404700	0.85[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4976571	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs4976572	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs4976573	0.81[CHB][hapmap]
rs4976575	0.93[CEU][hapmap];0.81[CHB][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6862251	0.87[CHB][hapmap]
rs6863691	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs6876251	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6885364	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs7706234	0.91[CHB][hapmap];0.96[JPT][hapmap];0.95[ASN][1000 genomes]
rs7712718	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs891931	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919738	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs984228	0.81[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167517400-167539400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
3	chr5:167532000-167544800	Weak transcription	Gastric	stomach
4	chr5:167532600-167542600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
6	chr5:167533600-167540000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:167533800-167559200	Weak transcription	NH-A	brain
8	chr5:167534000-167545200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:167536800-167538800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:167537000-167544800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:167537000-167550800	Weak transcription	HSMM	muscle
13	chr5:167537400-167538800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167537400-167538800	Enhancers	Primary hematopoietic stem cells	blood
15	chr5:167537800-167538800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:167537800-167541400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:167537800-167545200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:167538000-167538800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr5:167538000-167538800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr5:167538000-167539000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:167538200-167538800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:167538200-167538800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:167538400-167541400	Weak transcription	NHEK	skin
24	chr5:167538400-167544800	Weak transcription	Left Ventricle	heart

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