Variant report

Variant	rs12153437
Chromosome Location	chr5:167541354-167541355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167513289..167514132-chr5:167541216..167542021,2	MCF-7	breast:
2	chr5:167541006..167542085-chr5:167646466..167647492,9	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1077046	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1077047	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11134488	0.83[ASN][1000 genomes]
rs11740665	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11741507	0.86[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs11741618	0.85[CHB][hapmap];0.96[JPT][hapmap];0.93[ASN][1000 genomes]
rs11747227	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11747283	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11748226	0.90[CHB][hapmap];0.96[JPT][hapmap];0.96[ASN][1000 genomes]
rs11951377	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12186523	0.86[CHB][hapmap];0.96[JPT][hapmap];0.95[ASN][1000 genomes]
rs12186726	0.86[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12186727	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12187313	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12187477	0.92[ASN][1000 genomes]
rs12188893	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1529681	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1529683	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1529684	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1560650	0.95[YRI][hapmap]
rs1897558	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2337120	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2569052	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs36001918	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3748	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4246812	0.84[JPT][hapmap]
rs4404700	0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs4976571	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4976572	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4976573	0.83[JPT][hapmap]
rs4976574	0.82[JPT][hapmap]
rs4976575	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs57005148	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6555783	0.85[ASN][1000 genomes]
rs6862251	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6863691	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6876251	0.91[CHB][hapmap];0.96[JPT][hapmap];0.96[ASN][1000 genomes]
rs6885364	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7706234	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7712718	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs891931	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs919737	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs919738	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs984228	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
2	chr5:167532000-167544800	Weak transcription	Gastric	stomach
3	chr5:167532600-167542600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:167532600-167552800	Weak transcription	Right Ventricle	heart
5	chr5:167533800-167559200	Weak transcription	NH-A	brain
6	chr5:167534000-167545200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:167534200-167549600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167537000-167544800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:167537000-167550800	Weak transcription	HSMM	muscle
10	chr5:167537800-167541400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:167537800-167545200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:167538400-167541400	Weak transcription	NHEK	skin
13	chr5:167538400-167544800	Weak transcription	Left Ventricle	heart
14	chr5:167538800-167542800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:167538800-167544600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:167538800-167544800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:167539400-167542800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:167540000-167544800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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