Variant report

Variant	rs7708643
Chromosome Location	chr5:167529727-167529728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167528914..167530429-chr5:167530458..167532101,2	K562	blood:
2	chr5:167527475..167530414-chr5:167530458..167532043,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10076597	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077046	0.87[CHD][hapmap];0.81[JPT][hapmap]
rs1077047	0.84[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11741618	0.81[JPT][hapmap]
rs11748226	0.80[JPT][hapmap]
rs11955988	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12186523	0.81[JPT][hapmap]
rs12186726	0.87[CHD][hapmap];0.81[JPT][hapmap]
rs12187313	0.92[CHD][hapmap]
rs12188893	0.87[CHD][hapmap];0.81[JPT][hapmap]
rs1529681	0.92[CHD][hapmap]
rs1529684	0.92[CHD][hapmap]
rs1897558	0.95[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1964376	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2337119	0.90[CHD][hapmap]
rs2569036	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2569040	0.84[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2569049	0.90[CHD][hapmap]
rs2569052	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2617969	0.84[ASN][1000 genomes]
rs2617970	0.83[ASN][1000 genomes]
rs3101758	0.90[CHD][hapmap]
rs36001918	0.87[ASN][1000 genomes]
rs4404700	0.87[CHD][hapmap];0.81[JPT][hapmap]
rs6876251	0.81[JPT][hapmap]
rs6885364	0.90[CHD][hapmap];0.81[JPT][hapmap]
rs7712718	0.92[CHD][hapmap]
rs919738	0.92[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7708643	FBLL1	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167513800-167536000	Weak transcription	NHDF-Ad	bronchial
2	chr5:167514000-167531200	Weak transcription	HSMMtube	muscle
3	chr5:167514200-167531400	Weak transcription	HSMM	muscle
4	chr5:167516200-167538400	Weak transcription	HMEC	breast
5	chr5:167516600-167532000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:167517400-167539400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167519200-167534800	Weak transcription	Esophagus	oesophagus
8	chr5:167522400-167530600	Weak transcription	Right Ventricle	heart
9	chr5:167524800-167532800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:167525400-167530600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:167525400-167530800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:167525400-167531400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:167525800-167532000	Weak transcription	Fetal Kidney	kidney
14	chr5:167526600-167536800	Weak transcription	Left Ventricle	heart
15	chr5:167526800-167552800	Weak transcription	Fetal Heart	heart
16	chr5:167528400-167531200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:167528600-167532000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:167529200-167530600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:167529200-167533800	Strong transcription	NHEK	skin
20	chr5:167529600-167530000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links